Browse Element(s) Details


Os.14216.3.S1_x_at

Description gb:NM_189505.1
DB_XREF= gi:34906093
GEN=P0020E09.7
TID=Os.14216.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14216 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein phosphatase 2C (P0020E09.7), mRNA.
PROD=putative protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7452011/11Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14216.3.S1_x_at--1087--8391Chr01:43489089..43489109 (21 bp)
GGCCGGCTCATCTCAAAGCTTAATC
LOC_Os01g74520
Os.14216.3.S1_x_at--658--2691Chr01:43489074..43489098 (25 bp)
AAGCTTAATCCTTTTCCTGGGATGA
LOC_Os01g74520
Os.14216.3.S1_x_at--986--3631Chr01:43488541..43488565 (25 bp)
CTTCCGTGCGCTCGAGAGAATCAAT
LOC_Os01g74520
Os.14216.3.S1_x_at--793--5911Chr01:43488503..43488527 (25 bp)
GAGCTATGCAGGGTACTCTTACTGA
LOC_Os01g74520
Os.14216.3.S1_x_at--271--891Chr01:43488290..43488314 (25 bp)
AGGCCATTGCCTTAGCTGGATACAA
LOC_Os01g74520
Os.14216.3.S1_x_at--864--8291Chr01:43488223..43488247 (25 bp)
GGCTATACTATTGCGTTTGGGATCA
LOC_Os01g74520
Os.14216.3.S1_x_at--1055--111Chr01:43487119..43487143 (25 bp)
ATTCATTTTCTGTGATTCCGGCTGT
LOC_Os01g74520
Os.14216.3.S1_x_at--904--7391Chr01:43487077..43487101 (25 bp)
GTGATCGCCAGTCATACCAATACTT
LOC_Os01g74520
Os.14216.3.S1_x_at--196--2011Chr01:43487056..43487080 (25 bp)
ACTTGGTTGAGAGTATCCGCCGGTT
LOC_Os01g74520
Os.14216.3.S1_x_at--175--6911Chr01:43487045..43487068 (24 bp)
GTATCCGCCGGTTTCCAAATCAGGA
LOC_Os01g74520
Os.14216.3.S1_x_at--826--5511Chr01:43486728..43486752 (25 bp)
GAAAAGTTTGCTCAGATGATCCAAG
LOC_Os01g74520
Target Sequence 
GGCCGGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAGGGGATGTTGCCTT
CCGTGCGCTCGAGAGAATCAATAGCGTGAGCCATAGAGCTATGCAGGGTACTCTTACTGATATTGAAGAAGAAACACAAA
TCTATGTTTGTGACATTAATCCAAATATGCTGAATGTTGGAAAGAAACGTGCTTCAGAAAGAGGATACAAAGAAGGCCAT
TGCCTTAGCTGGATACAAGGAGATGCTGAAGCTCTGAGTTTTGAGGATGGATCTATGGATGGCTATACTATTGCGTTTGG
GATCAGAAATGTGACACACATTGAAAAAGCTCTATCAGAAGCTTATAGTTATGATGTTTATTCATTTTCTGTGATTCCGG
CTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAGGAA
AAGTTTGCTCAGATGATCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14216.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis