Browse Element(s) Details


Os.14248.1.S1_at

Description gb:AK108326.1
DB_XREF= gi:32993535
TID=Os.14248.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H07, full insert sequence.
FL= gb:AK108326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0825010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14248.1.S1_at--1117--4711Chr03:4179226..4179250 (25 bp)
GCTGGAGTTCCATGACGCCTGAGAC
LOC_Os03g08250
Os.14248.1.S1_at--613--5811Chr03:4179213..4179237 (25 bp)
GACGCCTGAGACGACAGATCGAAGA
LOC_Os03g08250
Os.14248.1.S1_at--337--9511Chr03:4179180..4179204 (25 bp)
TCTCCCATGGCGCTAGCTATAGCTA
LOC_Os03g08250
Os.14248.1.S1_at--74--10071Chr03:4179157..4179181 (25 bp)
TAGTCCTAGCCTCTTTCTCTTTTAA
LOC_Os03g08250
Os.14248.1.S1_at--1105--8991Chr03:4179130..4179154 (25 bp)
TGAATCTCTCTACCTTAATTGCTGC
LOC_Os03g08250
Os.14248.1.S1_at--176--10191Chr03:4179084..4179108 (25 bp)
TATTTAGCTCGCAATAATTACGTGC
LOC_Os03g08250
Os.14248.1.S1_at--86--3151Chr03:4179069..4179093 (25 bp)
AATTACGTGCTCAATTTGTACGCAA
LOC_Os03g08250
Os.14248.1.S1_at--836--211Chr03:4179056..4179080 (25 bp)
ATTTGTACGCAAAATCCTGCAAGTT
LOC_Os03g08250
Os.14248.1.S1_at--1117--4271Chr03:4179041..4179065 (25 bp)
CCTGCAAGTTCTCCAGCTTTGTGTA
LOC_Os03g08250
Os.14248.1.S1_at--110--811Chr03:4179005..4179029 (25 bp)
ATGGGAAACAACATTCTGGAGGACA
LOC_Os03g08250
Os.14248.1.S1_at--97--10091NONE
TAGGGATGCTGCTCAATCCCATTTT
NONE
Target Sequence 
GCTGGAGTTCCATGACGCCTGAGACGACAGATCGAAGATCTGTTGCTCTCCCATGGCGCTAGCTATAGCTAGTCCTAGCC
TCTTTCTCTTTTAATTTGAATCTCTCTACCTTAATTGCTGCTTAATTTTCCTAGCTTGATTATATTTAGCTCGCAATAAT
TACGTGCTCAATTTGTACGCAAAATCCTGCAAGTTCTCCAGCTTTGTGTANCTGTGAAGGAATGGGAAACAACATTCTGG
AGGACAATGAGAGATTGAGAGCTAAGGTGGAAAAAAGAATTCCATTTTTCTNTAGGGATGCTGCTCAATCCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis