Browse Element(s) Details


Os.14381.2.S1_x_at

Description gb:CA754177
DB_XREF= gi:25798208
DB_XREF=BR040010000_PLATE_G12_95_099.ab1
CLONE=BR040010000_PLATE_G12_95_099.ab1
TID=Os.14381.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0090P23.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2830010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14381.2.S1_x_at--491--1731Chr03:16265056..16265080 (25 bp)
ACCATCCAAATGTTCTAGCACTTTA
LOC_Os03g28300
Os.14381.2.S1_x_at--348--831Chr03:16265140..16265164 (25 bp)
ATGGATCCCTCAAGAAAGTCCTCCT
LOC_Os03g28300
Os.14381.2.S1_x_at--325--3111Chr03:16265176..16265200 (25 bp)
AATATCTTGATTGGCGCAAGCGCAT
LOC_Os03g28300
Os.14381.2.S1_x_at--831--8211Chr03:16265231..16265255 (25 bp)
GGAATACTTGCACTCCAAGGACATT
LOC_Os03g28300
Os.14381.2.S1_x_at--838--951Chr03:16265248..16265272 (25 bp)
AGGACATTGTCCACTTTGATCTGAA
LOC_Os03g28300
Os.14381.2.S1_x_at--966--5211Chr03:16265291..16265315 (25 bp)
GAATATTAAGGATCCCTCTCGTCCC
LOC_Os03g28300
Os.14381.2.S1_x_at--888--2211Chr03:16265514..16265538 (25 bp)
ACAAGCGACTCTTGTTTCTGGTGGA
LOC_Os03g28300
Os.14381.2.S1_x_at--385--1331Chr03:16265542..16265566 (25 bp)
AGAGGAACTCTTCCTTGGATGGCTC
LOC_Os03g28300
Os.14381.2.S1_x_at--367--8011Chr03:16265558..16265582 (25 bp)
GGATGGCTCCAGAATTGCTGACAAT
LOC_Os03g28300
Os.14381.2.S1_x_at--628--7971Chr03:16266505..16266529 (25 bp)
GGATCCATATGACGGCATGCACTAT
LOC_Os03g28300
Os.14381.2.S1_x_at--885--2011NONE
ACTAGTGCCCACTTCATGTAACCTG
NONE
Target Sequence 
ACCATCCAAATGTTCTAGCACTTTATGGTATTGTAAATAATGGACCTGGGGGAACATTAGCTACTGTAACAGAATTCATG
ATCAATGGATCCCTCAAGAAAGTCCTCCTTCACAAAAACAAATATCTTGATTGGCGCAAGCGCATAATGGTTGCAAAGGA
TGCAGCCATTGGAATGGAATACTTGCACTCCAAGGACATTGTCCACTTTGATCTGAAATGTGATAACTTGTTGGTGAATA
TTAAGGATCCCTCTCGTCCCATATGCAAGGTTGCTGATTTTGGTTTGTCGAAGATGAAACAAGCGACTCTTGTTTCTGGT
GGAATGAGAGGAACTCTTCCTTGGATGGCTCCAGAATTGCTGACAATGAGTGGCACAAAAGTATCCGAAAAGATTGATGT
ATATTCATTTGGCATTGTGATGTGGGAAATTCTGACTGGTGAGGATCCATATGACGGCATGCACTATGGAGGAGTCATAG
GNNNNNNNNNNNNNTACACACTGAGGCCACTAGTGCCCACTTCATGTAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14381.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis