Browse Element(s) Details


Os.14385.1.S1_at

Description gb:AK100823.1
DB_XREF= gi:32986032
TID=Os.14385.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acyl carrier protein (P0592C06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122I22, full insert sequence.
FL= gb:AK103131.1 gb:AK100823.1 gb:AY224456.1 gb:AK060442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1215011/11Acyl carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14385.1.S1_at--351--1051Chr07:6797661..6797685 (25 bp)
AGGTGAGTCCCGAGGCGCACTTCGA
LOC_Os07g12150
Os.14385.1.S1_at--608--6151Chr07:6797741..6797765 (25 bp)
GAGGAGTTCAAGCTCGAGATCCCCG
LOC_Os07g12150
Os.14385.1.S1_at--359--4251Chr07:6797858..6797882 (25 bp)
CCGTGGTGAGGCTTTTCTTGATTTA
LOC_Os07g12150
Os.14385.1.S1_at--270--5531Chr07:6797930..6797954 (25 bp)
GAAAACTTGTCCCTGGTACTCTAGA
LOC_Os07g12150
Os.14385.1.S1_at--900--10111Chr07:6797956..6797980 (25 bp)
TATGTGTTATGTTGCCATCGATGTC
LOC_Os07g12150
Os.14385.1.S1_at--998--3531Chr07:6797971..6797995 (25 bp)
CATCGATGTCGATCTCTAATGTAAC
LOC_Os07g12150
Os.14385.1.S1_at--1051--8731Chr07:6797990..6798014 (25 bp)
TGTAACATCCACAATTTCGGTTTTG
LOC_Os07g12150
Os.14385.1.S1_at--966--6331Chr07:6798024..6798048 (25 bp)
GATGCTAGATTCTTGCTCTTTTGCT
LOC_Os07g12150
Os.14385.1.S1_at--1021--4811Chr07:6798038..6798062 (25 bp)
GCTCTTTTGCTCAATTGTTCATCAT
LOC_Os07g12150
Os.14385.1.S1_at--1153--9591Chr07:6798056..6798080 (25 bp)
TCATCATGTCGGATGTGCCGTTGTT
LOC_Os07g12150
Os.14385.1.S1_at--581--10831Chr07:6798122..6798146 (25 bp)
TTGTGGTGCACAAACTTGCTCCAGT
LOC_Os07g12150
Target Sequence 
AGGTGAGTCCCGAGGCGCACTTCGAGAAGGATCTGGGGCTGGACAGCCTGGACACGGTGGAGGTGGTGATGGCGATCGAG
GAGGAGTTCAAGCTCGAGATCCCCGACCAGGAGGCCGACAAGATCGACTCCCTCCCGCTCGCCATCGAGTACGTCGCCAA
CCACCCCATGGCCGCCTGACCTCACCGATCCGTCGTGCCGTGGTGAGGCTTTTCTTGATTTACTATTTTTGTTCTGCGGG
GGATGAATAATTTTGCTGGAGTGGTTCAGGAAAACTTGTCCCTGGTACTCTAGATTATGTGTTATGTTGCCATCGATGTC
GATCTCTAATGTAACATCCACAATTTCGGTTTTGTGACAATATGATGCTAGATTCTTGCTCTTTTGCTCAATTGTTCATC
ATGTCGGATGTGCCGTTGTTGTTAAATAGTTTTGGGATGTGCTGTTGTTGATGAACTAGTTTTGTGGTGCACAAACTTGC
TCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis