Browse Element(s) Details


Os.14424.1.S1_at

Description gb:AK061316.1
DB_XREF= gi:32971334
TID=Os.14424.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D08, full insert sequence.
FL= gb:AK061316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2956011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29530Os.41695.15.S1_s_at11/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.2.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.5.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.3.S1_x_at8/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.4.S1_x_at1/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14424.1.S1_at--1148--2091Chr12:17617354..17617378 (25 bp)
ACATGCCGCGATATAATCTGCTGCC
LOC_Os12g29560
Os.14424.1.S1_at--109--9191Chr12:17617375..17617399 (25 bp)
TGCCGGTGCTGTTGATCTTGTACAT
LOC_Os12g29560
Os.14424.1.S1_at--939--8671Chr12:17617460..17617484 (25 bp)
TGTGTAGTGTAATTCCTCTGCCTTC
LOC_Os12g29560
Os.14424.1.S1_at--1111--10451Chr12:17617492..17617516 (25 bp)
TTAGCCTGTGGAAGCATGCATGCCT
LOC_Os12g29560
Os.14424.1.S1_at--1053--631Chr12:17617507..17617531 (25 bp)
ATGCATGCCTTTTTCGTGAGCTGCA
LOC_Os12g29560
Os.14424.1.S1_at--668--5891Chr12:17617524..17617548 (25 bp)
GAGCTGCACCTATGTGGTTGTTCAT
LOC_Os12g29560
Os.14424.1.S1_at--711--6091Chr12:17617556..17617580 (25 bp)
GAGTCAGGCCTGGTTGTTCATGTAA
LOC_Os12g29560
Os.14424.1.S1_at--1004--31Chr12:17617825..17617849 (25 bp)
ATTGTCAATGTCAGGCACGTACGCA
LOC_Os12g29560
Os.14424.1.S1_at--929--2751Chr12:17617856..17617880 (25 bp)
AAGACAAGTGCTGCGTGTTCTCGGT
LOC_Os12g29560
Os.14424.1.S1_at--113--1271Chr12:17617895..17617919 (25 bp)
AGATTTACCTCGTTGGCTTGCCATA
LOC_Os12g29560
Os.14424.1.S1_at--469--8771Chr12:17617924..17617948 (25 bp)
TGTTTGCTATTGCTGAGGCTGCGTT
LOC_Os12g29560
Target Sequence 
ACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTT
TCACATGTGGAAGCATATGCTTAGCCTGTGTAGTGTAATTCCTCTGCCTTCTTTTTTTTTAGCCTGTGGAAGCATGCATG
CCTTTTTCGTGAGCTGCACCTATGTGGTTGTTCATGTAAAGAGAGTCAGGCCTGGTTGTTCATGTAAAGTACATGACCGC
ATGTACATTTTCAAGCACAAGACGTGTGTCTGTGTGGGCTTAGATCCAATCGTTGTGGTAGATTAGTTCCACCATTTTTC
TTTTTGAAATCAGGGATGGTTGATTACTGATAAGTTGGTTTTGAGCACACAAGCTTTAGTAGGAAACCGTTACTACTTGT
GTCGAAAATTTGTATTCTGAGTTCGAGTTGTGGCAGTAAATGTTACACGTGGTATTTGTCGGACGTATTGTATTGTCAAT
GTCAGGCACGTACGCAATGCTGAAGACAAGTGCTGCGTGTTCTCGGTGGTTTTTTTGTATCAGATTTACCTCGTTGGCTT
GCCATAATGTTGTTTGCTATTGCTGAGGCTGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis