Browse Element(s) Details


Os.14528.1.S1_at

Description gb:AK066373.1
DB_XREF= gi:32976391
TID=Os.14528.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full insert sequence.
FL= gb:AK066373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0125011/11tobamovirus multiplication protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01214OsAffx.16025.1.S1_s_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.1.S1_x_at11/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01214Os.27454.2.S1_at9/117+120554..126329transposon protein, putative, unclassified, expressed
LOC_Os07g01230Os.50516.1.S1_at11/117+127012..129670expressed protein
LOC_Os07g01240Os.54098.1.S1_at10/117+132461..141877expressed protein
LOC_Os07g01240OsAffx.17848.5.S1_x_at1/117+132461..141877expressed protein
LOC_Os07g01250Os.14528.1.S1_at11/117+145440..148483tobamovirus multiplication protein 3, putative, expressed
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0046790molecular_functionvirion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14528.1.S1_at--28--271Chr07:147227..147251 (25 bp)
ATAGTAGTTGTCTCTTTTGTGGCTC
LOC_Os07g01250
Os.14528.1.S1_at--138--8671Chr07:147210..147234 (25 bp)
TGTGGCTCTTCTTGGCTTTTCAGTA
LOC_Os07g01250
Os.14528.1.S1_at--1014--5971Chr07:147052..147076 (25 bp)
GAGACGTTTCCCCATTGAATCTAAG
LOC_Os07g01250
Os.14528.1.S1_at--942--3051Chr07:146278..146302 (25 bp)
AATCTGCTGTGCTTGTTTCCTGATA
LOC_Os07g01250
Os.14528.1.S1_at--724--6891Chr07:145941..145965 (25 bp)
GTATCTCTGGAGGTTTTGGACCATC
LOC_Os07g01250
Os.14528.1.S1_at--520--1351Chr07:145768..145792 (25 bp)
AGAGATACTGCCTTCAGCTCTTGTC
LOC_Os07g01250
Os.14528.1.S1_at--951--9791Chr07:145717..145741 (25 bp)
TAAGCGGGTGTCAGCGCAGTACCAC
LOC_Os07g01250
Os.14528.1.S1_at--1049--6951Chr07:145699..145723 (25 bp)
GTACCACCCAATCAACTAGCTAGAG
LOC_Os07g01250
Os.14528.1.S1_at--48--6211Chr07:145677..145701 (25 bp)
GAGGCCTCCTAGTTAGTTACTACAT
LOC_Os07g01250
Os.14528.1.S1_at--831--2451Chr07:145571..145595 (25 bp)
AACAAACTAGAATTGCGCCTGGCAA
LOC_Os07g01250
Os.14528.1.S1_at--333--7951Chr07:145473..145497 (25 bp)
GGATAGTCAGCTGCTCCATTAATGA
LOC_Os07g01250
Target Sequence 
ATAGTAGTTGTCTCTTTTGTGGCTCTTCTTGGCTTTTCAGTATATGGTGGAAGGCTGTTCTTCTTGCTGAGACGTTTCCC
CATTGAATCTAAGGGGCGAAAAAANGAAGCTTTATGAGGTTGGGACAGTGACTGCAATCTGCTGTGCTTGTTTCCTGATA
AGGTGCATAGTGGTGGCGATATCAGCATTTGATTCTGATGTATCTCTGGAGGTTTTGGACCATCCAATTCTTGATTTCTT
CTACTATATGTTGACAGAGATACTGCCTTCAGCTCTTGTCCTTTTCATCCTCCGGAAGCTCCCTCCTAAGCGGGTGTCAG
CGCAGTACCACCCAATCAACTAGCTAGAGGCCTCCTAGTTAGTTACTACATAATATGATGTTATTATATACTACTGTACT
TAGTATGTTAGTTATGGGAAAACTTTGAACTCCTCCCAAAAAGAAGAAAGAAAACAAACTAGAATTGCGCCTGGCAAGCA
GGAGCGGGATGCTGGTAGTGCTTTGAGCTGTAAATGATTGAAAGCGTCAACAAGGCCTTGTTACTTGGATGGATAGTCAG
CTGCTCCATTAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis