Browse Element(s) Details


Os.1460.2.S1_at

Description gb:AK121694.1
DB_XREF= gi:37991317
TID=Os.1460.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0011G08.35 (P0011G08.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072F06, full insert sequence.
FL= gb:AK121694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0645410/11DNAJ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1460.2.S1_at--87--4431Chr01:3040013..3040037 (25 bp)
GCCAGTAGATATAGCATCCAAGCTT
LOC_Os01g06454
Os.1460.2.S1_at--647--2731Chr01:3039976..3040000 (25 bp)
AAGCAAGGCCTATAGTTCCCAGGAT
LOC_Os01g06454
Os.1460.2.S1_at--1099--551NONE
ATCCTGGGTGTCAGAGAAAATGTCC
NONE
Os.1460.2.S1_at--665--5371Chr01:3038635..3038659 (25 bp)
GAAAATGTCCATCCTGAGAAGGTTA
LOC_Os01g06454
Os.1460.2.S1_at--920--7811Chr01:3038594..3038618 (25 bp)
GGTCATGGTTGCCAATCATCCGGAT
LOC_Os01g06454
Os.1460.2.S1_at--846--7891Chr01:3038588..3038612 (25 bp)
GGTTGCCAATCATCCGGATGCAGGG
LOC_Os01g06454
Os.1460.2.S1_at--415--7111Chr01:3038559..3038583 (25 bp)
GTCATTACCTTGCTTCGAAGATTAA
LOC_Os01g06454
Os.1460.2.S1_at--829--6211Chr01:3038533..3038557 (25 bp)
GAGGCCAAAGATGTTTTGCTAGGTA
LOC_Os01g06454
Os.1460.2.S1_at--178--6151Chr01:3038499..3038523 (25 bp)
GAGGTGGATCAGTCTTTTGAGTATA
LOC_Os01g06454
Os.1460.2.S1_at--642--3091Chr01:3038473..3038497 (25 bp)
AATATGCACTGTTCGTTCCTTTTTT
LOC_Os01g06454
Os.1460.2.S1_at--73--10392Chr08:26633613..26633814 (25 bp)
TTTTGAAACCAAAGCCAGGCTAAGC
NONE
Target Sequence 
GCCAGTAGATATAGCATCCAAGCTTGGCATGCTTATAAAGCAAGGCCTATAGTTCCCAGGATGCGCAAATTCTATGAAGG
TGGTTTTCAACCTGNAATGNCCCGAAGGGAAGCTGGTTTAATCCTGGGTGTCAGAGAAAATGTCCATCCTGAGAAGGTTA
AAGAGGCACACAAAAAGGTCATGGTTGCCAATCATCCGGATGCAGGGGGCAGTCATTACCTTGCTTCGAAGATTAATGAG
GCCAAAGATGTTTTGCTAGGTAAAACAAAAGGAGGTGGATCAGTCTTTTGAGTATATAATATGCACTGTTCGTTCCTTTT
TTTTTTTTTTGAAACCAAAGCCAGGCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1460.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis