Browse Element(s) Details


Os.14624.1.S1_x_at

Description gb:AK100543.1
DB_XREF= gi:32985752
TID=Os.14624.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vacuolar proton-ATPase subunit 1 (P0460C04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102L09, full insert sequence.
FL= gb:AK069188.1 gb:AK099857.1 gb:AK059495.1 gb:AK100543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6178011/11V-type ATPase 116kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61800OsAffx.21767.1.S1_at6/111+36079339..36081044ZmEBE-1 protein, putative, expressed
LOC_Os01g61810Os.22637.1.S1_a_at11/111+36083183..36085512CCAAT-binding transcription factor subunit HAP3A, putative, expressed
LOC_Os01g61820Os.26532.1.S1_a_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.1.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.26532.2.S1_x_at11/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820Os.57454.1.S1_x_at7/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.28576.2.S1_x_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61820OsAffx.22334.1.S1_at1/111+36086918..36091915ribosomal protein S23 containing protein, expressed
LOC_Os01g61830Os.32086.3.S1_s_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.1.S1_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.2.S1_x_at11/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g61830Os.32086.3.S1_x_at10/111+36094431..36099226Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14624.1.S1_x_at--88--8011Chr01:36069940..36069964 (25 bp)
GGATGGCTATAAATTCAGACCCTTT
LOC_Os01g61780
Os.14624.1.S1_x_at--435--10311Chr01:36069963..36069987 (25 bp)
TTTCATTCGCTCTGCTAGCTGATGA
LOC_Os01g61780
Os.14624.1.S1_x_at--1030--8931Chr01:36069985..36070009 (25 bp)
TGACGAAGACTGATGCATACAAAAT
LOC_Os01g61780
Os.14624.1.S1_x_at--901--9831Chr01:36070018..36070042 (25 bp)
TAAAGAGATTAAGCTTGTTTCTTGC
LOC_Os01g61780
Os.14624.1.S1_x_at--561--2151Chr01:36070098..36070122 (25 bp)
ACAGCATTTTGTCAGACCGCCGGGC
LOC_Os01g61780
Os.14624.1.S1_x_at--695--6751Chr01:36070188..36070212 (25 bp)
GTTCACGGCAATACTGTAGAGGGCA
LOC_Os01g61780
Os.14624.1.S1_x_at--468--3791Chr01:36070218..36070242 (25 bp)
CTCGTACAGTTCCTCCAGTGGAGAA
LOC_Os01g61780
Os.14624.1.S1_x_at--2--5511Chr01:36070348..36070372 (25 bp)
GAAAATGGAAGTTGCAGTCGTTTTT
LOC_Os01g61780
Os.14624.1.S1_x_at--329--3591Chr01:36070379..36070403 (25 bp)
CATTACGTGATTAGGTTGTAACGAA
LOC_Os01g61780
Os.14624.1.S1_x_at--442--9811Chr01:36070397..36070421 (25 bp)
TAACGAAGGGTGACAATTATTGAAC
LOC_Os01g61780
Os.14624.1.S1_x_at--262--1571Chr01:36070450..36070474 (25 bp)
AGCTAAAGCATATATGGTTTCCCAA
LOC_Os01g61780
Target Sequence 
GGATGGCTATAAATTCAGACCCTTTTCATTCGCTCTGCTAGCTGATGACGAAGACTGATGCATACAAAATTCAGCAGATA
AAGAGATTAAGCTTGTTTCTTGCCATTTTTGGAGCACGTGAGTGGAATTCTTTCGACCAAGATGGGTTTCCCCAATACAC
AGCATTTTGTCAGACCGCCGGGCTTCTTCCGAACGCATGTGTGCAGTCCTGGTTGAGATTGCCAGCGTGGTGGGAGGAGA
TTTTGTAAGTTCACGGCAATACTGTAGAGGGCAGGTTTCTCGTACAGTTCCTCCAGTGGAGAAGCAGATTATAGATGCTA
ACAACAAAGATAGAAATGTAGATTTGCTATGTCTACTTTTAGCTCTTATACTTTGTCCAAGTGACTGTCCCAGTATCCCT
TACCACTTGAAAATGGAAGTTGCAGTCGTTTTTTTTAATCATTACGTGATTAGGTTGTAACGAAGGGTGACAATTATTGA
ACTACAATGTTTGTCAATTCAAATAAGAAAAGCTAAAGCATATATGGTTTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14624.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis