Browse Element(s) Details


Os.14667.1.S1_x_at

Description gb:AK059391.1
DB_XREF= gi:32969409
TID=Os.14667.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14667 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H07, full insert sequence.
FL= gb:AK059391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3825011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14667.1.S1_x_at--1153--9011Chr05:22343820..22343844 (25 bp)
TGCAACCACGTTTATAATTCACAGA
LOC_Os05g38250
Os.14667.1.S1_x_at--241--9751Chr05:22343834..22343858 (25 bp)
TAATTCACAGACTTCAGCAGCATAA
LOC_Os05g38250
Os.14667.1.S1_x_at--775--1491Chr05:22343849..22343873 (25 bp)
AGCAGCATAAATTGACTCCATCTAT
LOC_Os05g38250
Os.14667.1.S1_x_at--1132--51Chr05:22343859..22343883 (25 bp)
ATTGACTCCATCTATTTGATGCAGG
LOC_Os05g38250
Os.14667.1.S1_x_at--135--1031Chr05:22343881..22343905 (25 bp)
AGGTAACTGCACTTCTGTCCTTTGC
LOC_Os05g38250
Os.14667.1.S1_x_at--1093--9051Chr05:22343906..22343930 (25 bp)
TGCATCTTGCTCAGCTGGAGGTGTT
LOC_Os05g38250
Os.14667.1.S1_x_at--521--4711Chr05:22343919..22343943 (25 bp)
GCTGGAGGTGTTATGGTTCTGTTTA
LOC_Os05g38250
Os.14667.1.S1_x_at--267--2871Chr05:22343945..22343969 (25 bp)
AAGGGACGTGCTTTTCTGCAGAAGG
LOC_Os05g38250
Os.14667.1.S1_x_at--298--9551Chr05:22344079..22344103 (25 bp)
TCTAGTCTTGCATATAATCCTGTGT
LOC_Os05g38250
Os.14667.1.S1_x_at--850--6711Chr05:22344106..22344130 (25 bp)
GTTCTGTTTATAGTGCTGCCTTTTT
LOC_Os05g38250
Os.14667.1.S1_x_at--1067--10111Chr05:22344180..22344204 (25 bp)
TATGTAGTGAACCACACGACCGAAA
LOC_Os05g38250
Target Sequence 
TGCAACCACGTTTATAATTCACAGACTTCAGCAGCATAAATTGACTCCATCTATTTGATGCAGGTAACTGCACTTCTGTC
CTTTGCTGCATCTTGCTCAGCTGGAGGTGTTATGGTTCTGTTTANAAGGGACGTGCTTTTCTGCAGAAGGTATCNCACNA
CNGCCTTGTGGGAGANTTCGAACTTGNNGTAGCGCTTGCATTTNTTGTCNTGGGNCANCNTAGTGCTACATCAGCCANTT
ATCATGNTCTGTCTCCTTGCTGCANTTCTAGTCTTGCATATAATCCTGTGTAAGTTCTGTTTATAGTGCTGCCTTTTTTC
TGTTNTTATCTTGTTAGCTTTGATTTTGTATAGGATCATTTTCAAGAATATGTAGTGAACCACACGACCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14667.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis