Browse Element(s) Details


Os.14694.1.S1_at

Description gb:AK061426.1
DB_XREF= gi:32971444
TID=Os.14694.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full insert sequence.
FL= gb:AK069219.1 gb:AK061426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4509011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45040Os.16156.1.S1_at11/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45040Os.16156.2.S1_at9/114+26424993..26431182ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os04g45050OsAffx.14270.1.S1_at11/114+26436674..26437090hypothetical protein
LOC_Os04g45060OsAffx.4095.1.S1_at11/114+26440920..26442318typical P-type R2R3 Myb protein, putative
LOC_Os04g45070Os.7891.1.S1_a_at11/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45070OsAffx.8592.1.S1_at1/114+26445615..26449156Remorin, C-terminal region family protein, expressed
LOC_Os04g45080OsAffx.26468.1.S1_at10/114+26450084..26452902expressed protein
LOC_Os04g45090Os.14694.1.S1_at11/114+26455262..26457648Cytochrome b561 family protein, expressed
LOC_Os04g45100OsAffx.14271.1.S1_at11/114+26458907..26459637expressed protein
LOC_Os04g45110OsAffx.26469.1.S1_at11/114+26460405..26461755Serpin family protein
LOC_Os04g45110OsAffx.26469.2.S1_x_at2/114+26460405..26461755Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45120OsAffx.26469.2.S1_x_at11/114+26463554..26464878Serpin family protein
LOC_Os04g45130OsAffx.14273.1.S1_at11/114+26465542..26466563heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14694.1.S1_at--1142--10671Chr04:26455911..26455935 (25 bp)
TTCCACAACGAGAGCGGGATCGCCA
LOC_Os04g45090
Os.14694.1.S1_at--341--9451Chr04:26455862..26455886 (25 bp)
TCGGCATCGGAACAATCTCGCTGTA
LOC_Os04g45090
Os.14694.1.S1_at--903--3051Chr04:26455852..26455873 (22 bp)
AATCTCGCTGTACGGCATTCAGTGG
LOC_Os04g45090
Os.14694.1.S1_at--21--231Chr04:26455727..26455751 (25 bp)
ATTTGGATTCGTGGCGTTCTTCTAC
LOC_Os04g45090
Os.14694.1.S1_at--577--9091Chr04:26455656..26455680 (25 bp)
TGCTGTTCGGGCTGTTCGTCTACGT
LOC_Os04g45090
Os.14694.1.S1_at--1161--8531Chr04:26455599..26455623 (25 bp)
TGGAGAAGCTGACCTTCCTCCAGAG
LOC_Os04g45090
Os.14694.1.S1_at--512--8011Chr04:26455550..26455574 (25 bp)
GGAGGCGTTCCTGGTGAACTTCACG
LOC_Os04g45090
Os.14694.1.S1_at--303--5451Chr04:26455459..26455483 (25 bp)
GAACCCGAGGGCTATGCTCCAATTC
LOC_Os04g45090
Os.14694.1.S1_at--279--9191Chr04:26455442..26455466 (25 bp)
TCCAATTCCGGTCAACTAGCTATGT
LOC_Os04g45090
Os.14694.1.S1_at--641--2531Chr04:26455429..26455453 (25 bp)
AACTAGCTATGTTTCGCGGTTGCTG
LOC_Os04g45090
Os.14694.1.S1_at--720--5271Chr04:26455277..26455301 (25 bp)
GAATGCACATAGTTACCGAATCCAA
LOC_Os04g45090
Target Sequence 
TTCCACAACGAGAGCGGGATCGCCAACCTCTACAGCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCAT
TCAGTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACG
TGCTGTTCGGGCTGTTCGTCTACGTCCTGACGCTGGCGACGGCGGAGCTCGGGCTCCTGGAGAAGCTGACCTTCCTCCAG
AGCTCCGGCCTCGACAAGTACGGCGCGGAGGCGTTCCTGGTGAACTTCACGGGGCTGGTCGTCGCGCTGTTCGGCGCCGC
CGTCGTCGTGGCCGCCGTCGCGCCGGCTCACGTCGAGGAACCCGAGGGCTATGCTCCAATTCCGGTCAACTAGCTATGTT
TCGCGGTTGCTGGAAGTGATCATTAATACCACGAAATCAAAGGTGTAACAGCAGAATTCATATACCGATTTGTTTGTATT
CGGTGGACGATACTGTGCGATAATTCAACACTATCCAGGTAATTTACGTTTACTACAGTGAATGCACATAGTTACCGAAT
CCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis