Browse Element(s) Details

Os.14849.1.S1_a_at

Description

gb:AK120104.1
DB_XREF= gi:37989727
TID=Os.14849.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.14849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013077M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022P08, full insert sequence.
FL= gb:AK120104.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49500	11/11	integral membrane family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49430	Os.7913.1.S1_a_at	11/11	6	+	29948900..29953876	Protein kinase domain containing protein, expressed
LOC_Os06g49440	Os.24609.1.A1_s_at	11/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49440	Os.52405.1.S1_at	1/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49450	Os.48739.1.S1_x_at	6/11	6	+	29960227..29966297	expressed protein
LOC_Os06g49460	Os.11864.1.S1_at	11/11	6	+	29967038..29969466	RER1B protein, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_s_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480	Os.11856.1.S1_at	11/11	6	+	29972847..29975324	Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490	Os.7425.1.S1_at	11/11	6	+	29975878..29976669	zinc finger family protein, putative, expressed
LOC_Os06g49500	Os.14849.1.S1_a_at	11/11	6	+	29977814..29980993	integral membrane family protein, putative, expressed
LOC_Os06g49510	Os.9402.1.S1_at	11/11	6	+	29989036..29993453	Zinc knuckle family protein, expressed
LOC_Os06g49520	Os.10011.1.S1_at	11/11	6	+	29993594..29995122	D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed
LOC_Os06g49530	Os.17021.1.S1_at	10/11	6	+	29995313..29998223	F-box domain containing protein, expressed
LOC_Os06g49540	Os.14919.1.S1_at	7/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	Os.56216.1.S1_at	2/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	OsAffx.29313.1.S1_at	1/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14849.1.S1_a_at--888--983	1	Chr06:29978717..29978741 (25 bp)	TAAATACAGTTCTCGCCTATACTCC	LOC_Os06g49500
Os.14849.1.S1_a_at--7--33	2	Chr01:3538655..3538956 (25 bp)	ATACTCCTACGTCAAGATTTCCATC	NONE
Os.14849.1.S1_a_at--281--125	1	Chr06:29978659..29978683 (25 bp)	AGTTGGTTTATGTTCCATCTCCATC	LOC_Os06g49500
Os.14849.1.S1_a_at--385--341	1	Chr06:29978623..29978647 (25 bp)	CAGAATACTGAGCTCTATGCTGAAA	LOC_Os06g49500
Os.14849.1.S1_a_at--390--37	1	Chr06:29978563..29978587 (25 bp)	ATCAAGGAGCCATTTTTTCATCAAT	LOC_Os06g49500
Os.14849.1.S1_a_at--948--245	1	Chr06:29978522..29978546 (25 bp)	AACAATGGTCAGTGATCCTCCAGCT	LOC_Os06g49500
Os.14849.1.S1_a_at--710--637	1	Chr06:29978509..29978533 (25 bp)	GATCCTCCAGCTTCAACAGTTGTTT	LOC_Os06g49500
Os.14849.1.S1_a_at--576--119	1	Chr06:29978492..29978516 (25 bp)	AGTTGTTTTTACAGCCCACTGGTGG	LOC_Os06g49500
Os.14849.1.S1_a_at--138--751	1	Chr06:29978471..29978495 (25 bp)	GTGGTCACCAGTAGGAACAGCTTCA	LOC_Os06g49500
Os.14849.1.S1_a_at--1146--1001	1	Chr06:29978174..29978198 (25 bp)	TAGGCCTGGGAACTCAATCTGAAAC	LOC_Os06g49500
Os.14849.1.S1_a_at--674--607	1	Chr06:29978143..29978167 (25 bp)	GAGTTATTGATTACTTGCGGCAAGA	LOC_Os06g49500

Target Sequence

TAAATACAGTTCTCGCCTATACTCCTACGTCAAGATTTCCATCACTTTTAGAATTTGTAGTTGGTTTATGTTCCATCTCC
ATCATCAGGAATATCAGAATACTGAGCTCTATGCTGAAAATAAGTTTGAACAATAGCCATTGTTTTGAGCTCATATCAAG
GAGCCATTTTTTCATCAATGGAGGTGCCATTGGCTAACAATGGTCAGTGATCCTCCAGCTTCAACAGTTGTTTTTACAGC
CCACTGGTGGTCACCAGTAGGAACAGCTTCAGTGATTAAAGNNNGTTGTTCTCTAGGCCTGGGAACTCAATCTGAAACAG
AGTTGAGTTATTGATTACTTGCGGCAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis