Browse Element(s) Details


Os.14894.3.A1_at

Description gb:CB656892
DB_XREF= gi:29660617
DB_XREF=OSJNEc11L19.r
CLONE=OSJNEc11L19
TID=Os.14894.3
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14894 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192882.1 (A.thaliana) putative proline-rich protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g239101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23960OsAffx.19776.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23960OsAffx.20615.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14894.3.A1_at--55--5111NONE
GCACTACCATTCCATGGTTTGGAAG
NONE
Os.14894.3.A1_at--74--4311NONE
CCATTCCATGGTTTGGAAGACCAGT
NONE
Os.14894.3.A1_at--403--5351NONE
GAAGACCAGTGTGGGTTTTGCCCCG
NONE
Os.14894.3.A1_at--300--5851NONE
GACCAGTGTGGGTTTTGCCCCGGCA
NONE
Os.14894.3.A1_at--714--10692Chr03:8585910..8585929 (20 bp)
TTGCCCCGGCAAAATGAAGAAATAT
NONE
Os.14894.3.A1_at--368--5591NONE
GAAATATTCCAGCAACAAGGCTTTC
NONE
Os.14894.3.A1_at--751--4353Chr03:8585931..8585955 (25 bp)
CCAGCAACAAGGCTTTCATTGAAAG
NONE
Os.14894.3.A1_at--155--6573Chr03:8585980..8586004 (25 bp)
GATTCACCTCAGCTTGGATGCCTGA
NONE
Os.14894.3.A1_at--2--1753Chr03:8585985..8586009 (25 bp)
ACCTCAGCTTGGATGCCTGAAAGTA
NONE
Os.14894.3.A1_at--791--4473Chr03:8585999..8586023 (25 bp)
GCCTGAAAGTAGTGTTTGCAATTTT
NONE
Os.14894.3.A1_at--900--10073Chr03:8586030..8586054 (25 bp)
TATGTAATACAATCAACGTAGGTTG
NONE
Target Sequence 
GCACTACCATTCCATGGTTTGGAAGACCAGTGTGGGTTTTGCCCCGGCAAAATGAAGAAATATTCCAGCAACAAGGCTTT
CATTGAAAGCAAGANTGCCATTTTGTTTCATGNGATTCACCTCAGCTTGGATGCCTGAAAGTAGTGTTTGCAATTTTGAA
ACTTATGTAATACAATCAACGTAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14894.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis