Browse Element(s) Details


Os.14995.1.S1_a_at

Description gb:AK111506.1
DB_XREF= gi:37988169
TID=Os.14995.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.14995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001D05, full insert sequence.
FL= gb:AK111973.1 gb:AK112042.1 gb:AK111506.1 gb:AK098883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4896411/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48980Os.12153.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48980OsAffx.24792.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48990Os.27551.1.S1_at11/112+29944849..29950956CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g49000Os.45161.1.A1_x_at2/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.17536.1.S1_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.16451.1.A1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.8201.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified
LOC_Os02g49000OsAffx.22699.1.S1_x_at1/112+29958098..29966763retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14995.1.S1_a_at--195--5571Chr02:29929341..29929362 (22 bp)
GAAAGACTCTTCATTCCTTGAAAGG
LOC_Os02g48964
Os.14995.1.S1_a_at--234--7831Chr02:29929318..29929342 (25 bp)
GGTCACTTTGATTACTCGTTTGCAT
LOC_Os02g48964
Os.14995.1.S1_a_at--136--4031Chr02:29929302..29929326 (25 bp)
CGTTTGCATCAGCTTGGAGCCCAGA
LOC_Os02g48964
Os.14995.1.S1_a_at--914--8631Chr02:29929231..29929255 (25 bp)
TGGGATGCGCGGAATCTCTCTAAAT
LOC_Os02g48964
Os.14995.1.S1_a_at--370--3751Chr02:29929216..29929240 (25 bp)
CTCTCTAAATCCCTCCATGTTTTGA
LOC_Os02g48964
Os.14995.1.S1_a_at--225--1691Chr02:29929178..29929202 (25 bp)
AGCCATAAGATCAATCCGCTTCACG
LOC_Os02g48964
Os.14995.1.S1_a_at--70--4131Chr02:29929162..29929186 (25 bp)
CGCTTCACGTCAGATGGGCAGTTCA
LOC_Os02g48964
Os.14995.1.S1_a_at--213--851Chr02:29929132..29929156 (25 bp)
ATGGCAGAACCAGCGGACTTTGTCC
LOC_Os02g48964
Os.14995.1.S1_a_at--1069--10131Chr02:29929047..29929071 (25 bp)
TATCTGGCATGTCTTTCAGCCCGGA
LOC_Os02g48964
Os.14995.1.S1_a_at--1053--10231Chr02:29928967..29928991 (25 bp)
TTTGGCCGTCTGTATAATCACTCGT
LOC_Os02g48964
Os.14995.1.S1_a_at--890--9751Chr02:29928953..29928977 (25 bp)
TAATCACTCGTATCTTGACTCGCTG
LOC_Os02g48964
Target Sequence 
GAAAGACTCTTCATTCCTTGAAAGGTCACTTTGATTACTCGTTTGCATCAGCTTGGAGCCCAGATGGCAGAACATTTGCT
ACTGGCAACCAAGATAAGACATGCCGGATTTGGGATGCGCGGAATCTCTCTAAATCCCTCCATGTTTTGAGGGGTAACCT
TGGAGCCATAAGATCAATCCGCTTCACGTCAGATGGGCAGTTCATGTCGATGGCAGAACCAGCGGACTTTGTCCACGTCT
TCGATNGTCGGGAGTGATTACACCAGAAGGCAAGAGCTGGACTTCTTTGGTGAGATATCTGGCATGTCTTTCAGCCCGGA
CACCGACATGCTTTTTGTCGGTGTGTGGGATAGAACATACGGCAGCCTCCTCCAGTTTGGCCGTCTGTATAATCACTCGT
ATCTTGACTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14995.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis