Browse Element(s) Details


Os.15099.1.S1_at

Description gb:AK067514.1
DB_XREF= gi:32977532
TID=Os.15099.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108K19, full insert sequence.
FL= gb:AK067514.1 gb:AK062193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2343011/11glycoside hydrolase starch-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15099.1.S1_at--726--771Chr08:14035606..14035630 (25 bp)
ATGTGCACGTACTTGACATCAGGCA
LOC_Os08g23430
Os.15099.1.S1_at--331--1431Chr08:14035581..14035605 (25 bp)
AGAAAACAAAACTAGGGCTCCTCAG
LOC_Os08g23430
Os.15099.1.S1_at--651--4791Chr08:14035565..14035589 (25 bp)
GCTCCTCAGCAGCTCTCTTAAAGTG
LOC_Os08g23430
Os.15099.1.S1_at--814--7591Chr08:14035407..14035431 (25 bp)
GGGCATTTGAATTGCTACCATATTC
LOC_Os08g23430
Os.15099.1.S1_at--316--5991Chr08:14035351..14035375 (25 bp)
GAGACATCAGAATCGCCTCCGAAAG
LOC_Os08g23430
Os.15099.1.S1_at--826--4371Chr08:14035315..14035339 (25 bp)
CCAAAACTCTCTGTATTTCCTATCA
LOC_Os08g23430
Os.15099.1.S1_at--543--6291Chr08:14035241..14035265 (25 bp)
GATGATTTGGTTGTGCGATATGCTT
LOC_Os08g23430
Os.15099.1.S1_at--380--6511Chr08:14035225..14035249 (25 bp)
GATATGCTTTATTGTTATTCCCAGA
LOC_Os08g23430
Os.15099.1.S1_at--595--4811Chr08:14035176..14035200 (25 bp)
GCTCTGTTGTTAATTCTTTCCTGTG
LOC_Os08g23430
Os.15099.1.S1_at--247--10291Chr08:14035160..14035184 (25 bp)
TTTCCTGTGGTGATCCAACGTCAGA
LOC_Os08g23430
Os.15099.1.S1_at--135--1831Chr08:14035132..14035156 (25 bp)
ACGCCTTCCTGGTCAATGGTTTGAT
LOC_Os08g23430
Target Sequence 
ATGTGCACGTACTTGACATCAGGCAAGAAAACAAAACTAGGGCTCCTCAGCAGCTCTCTTAAAGTGTGGATTTTGTTGAA
GATCGCTAGAGGTTTTGCTCGTGGGGCATTTGAATTGCTACCATATTCTGATGAAAAGGAAACTGATGAGCGGAAGGAAG
AGACATCAGAATCGCCTCCGAAAGAAGCAGGCAGCCCAAAACTCTCTGTATTTCCTATCAAGAAGTGGATGAGCCGTGCA
AAGAGAGCGAAGTGAATCTCTACCAAAGAGATGATTTGGTTGTGCGATATGCTTTATTGTTATTCCCAGATCAAGAAGTA
CAGAATTTGATATGGCTCTGTTGTTAATTCTTTCCTGTGGTGATCCAACGTCAGATAGACGCCTTCCTGGTCAATGGTTT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis