Browse Element(s) Details


Os.15173.1.S1_at

Description gb:AK105383.1
DB_XREF= gi:32990592
TID=Os.15173.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C01, full insert sequence.
FL= gb:AK105383.1 gb:AK073679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4205011/11emp24/gp25L/p24 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed
LOC_Os08g42060NANA8+26429662..26430153hypothetical protein
LOC_Os08g42070OsAffx.29628.1.S1_at11/118+26435425..26435929hypothetical protein
LOC_Os08g42080OsAffx.17468.1.S1_s_at11/118+26439536..26442049ACT domain containing protein, expressed
LOC_Os08g42090OsAffx.19542.3.S1_x_at4/118+26448415..26452637retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15173.1.S1_at--334--531Chr08:26427627..26427651 (25 bp)
ATCGCTTCTGCTTCACCAATAAATC
LOC_Os08g42050
Os.15173.1.S1_at--706--9051Chr08:26427573..26427597 (25 bp)
TGCATGTTGGCCATTTTTCGTACTT
LOC_Os08g42050
Os.15173.1.S1_at--558--5491Chr08:26427446..26427470 (25 bp)
GAACATTTTGCTCCTTTGTTTGAAC
LOC_Os08g42050
Os.15173.1.S1_at--395--131Chr08:26427389..26427413 (25 bp)
ATTCAGTTCGAGCAGCACTGGCTAG
LOC_Os08g42050
Os.15173.1.S1_at--242--10031Chr08:26427367..26427391 (25 bp)
TAGAGGCCCAAACTGACCGACAAGC
LOC_Os08g42050
Os.15173.1.S1_at--223--4751Chr08:26426373..26426397 (25 bp)
GCTGATTGCAGCTAGCGTCATTCAA
LOC_Os08g42050
Os.15173.1.S1_at--336--131Chr08:26426354..26426378 (25 bp)
ATTCAAGTCTATCTATTGCGCCGCC
LOC_Os08g42050
Os.15173.1.S1_at--192--9511Chr08:26426259..26426283 (25 bp)
TCTCGTCATCCCAACTAAAGCTGTA
LOC_Os08g42050
Os.15173.1.S1_at--309--7491Chr08:26426192..26426216 (25 bp)
GTGGGTTGCTGTCACATAGACCTTT
LOC_Os08g42050
Os.15173.1.S1_at--934--391Chr08:26426106..26426130 (25 bp)
ATCAGCTTCACTATGCAGCTTCCAT
LOC_Os08g42050
Os.15173.1.S1_at--665--2573Chr07:26387143..26387258 (24 bp)
AACGGTCCCATGAATGTTCTCTTCG
NONE
Target Sequence 
ATCGCTTCTGCTTCACCAATAAATCCCCNNATACCATGAAACTGTAGATTTTGATGTGCATGTTGGCCATTTTTCGTACT
TNNGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCNGCTTTACAACA
TTCAGTTCGAGCAGCACTGGCTAGAGGCCCAAACTGACCGACAAGCTATATTGAACGAAAACATGAGCAGGAGGGCTGTC
CACAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCTTTGAGCG
CAAGTTGGGGACATCCAGGGTCTAAATACTCCAAAAGTAGCAGCTCCTCCTAATTTACACTCTCGTCATCCCAACTAAAG
CTGTAATTCCGNACTGTATTGGTTGCTAGATCTGCTGTTTACATGCTGTGGGTTGCTGTCACATAGACCTTTAATTATTA
TGATTCCATTAGATGTTTTCCTTGAAACTATACTNTCAGGACCACATACTCGCATCAGCTTCACTATGCAGCTTCCATCT
ACAGCTGCAACGGTCCCATGAATGTTCTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis