Browse Element(s) Details


Os.15265.1.A1_at

Description gb:CB665356
DB_XREF= gi:29669081
DB_XREF=OSJNEd11L07.r
CLONE=OSJNEd11L07
TID=Os.15265.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.15265 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49047 (A.thaliana) T49047 quinone reductase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2488010/11oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24810OsAffx.14814.1.S1_at11/115+14305402..14308183hypothetical protein
LOC_Os05g24810OsAffx.6425.1.S1_at2/115+14305402..14308183hypothetical protein
LOC_Os05g24820NANA5+14311133..14311879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24830NANA5+14314604..14315755hypothetical protein
LOC_Os05g24840Os.46995.1.S1_x_at2/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24840Os.46995.1.S1_at1/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24850NANA5+14321675..14324116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24860NANA5+14324236..14327139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24870NANA5+14327682..14327951hypothetical protein
LOC_Os05g24880Os.15265.1.A1_at10/115+14329824..14335860oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed
LOC_Os05g24890OsAffx.26994.1.S1_at3/115+14336324..14338283pentatricopeptide, putative, expressed
LOC_Os05g24900Os.49724.1.A1_at11/115+14339661..14341714expressed protein
LOC_Os05g24910Os.27639.1.S1_x_at3/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24910Os.53731.1.S1_at1/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24920OsAffx.8980.1.S1_at1/115+14348794..14349519transposon protein, putative, unclassified
LOC_Os05g24930OsAffx.4419.1.S1_at9/115+14350302..14354320pentatricopeptide, putative, expressed
LOC_Os05g24940OsAffx.14817.1.S1_at9/115+14354509..14355449hypothetical protein
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15265.1.A1_at--1032--2491NONE
AACATCGCTCTTGTTAAGAATTGGA
NONE
Os.15265.1.A1_at--633--8511Chr05:14334622..14334646 (25 bp)
TGGACAATTCATGGTTTGTACTGGG
LOC_Os05g24880
Os.15265.1.A1_at--1064--9591Chr05:14334660..14334684 (25 bp)
TCATCGGCCACCTGTACTCATTGAC
LOC_Os05g24880
Os.15265.1.A1_at--1117--10753Chr05:14334680..14334704 (25 bp)
TTGACTCCCTCAATGAACTCTTTTC
LOC_Os05g24880
Os.15265.1.A1_at--1004--1991Chr05:14334683..14334707 (25 bp)
ACTCCCTCAATGAACTCTTTTCATG
LOC_Os05g24880
Os.15265.1.A1_at--757--5471Chr05:14334694..14334718 (25 bp)
GAACTCTTTTCATGGCTTTCAAAGG
LOC_Os05g24880
Os.15265.1.A1_at--265--2451Chr05:14334727..14334751 (25 bp)
AAAATCCAGATTTCCCACACTTACA
LOC_Os05g24880
Os.15265.1.A1_at--789--9171Chr05:14334731..14334755 (25 bp)
TCCAGATTTCCCACACTTACAGGCT
LOC_Os05g24880
Os.15265.1.A1_at--85--3331Chr05:14334744..14334823 (25 bp)
CACTTACAGGCTCCCTGAGGCACAT
LOC_Os05g24880
Os.15265.1.A1_at--729--10111Chr05:14335569..14335593 (25 bp)
TATGCACATGTCATATGTATAGACC
LOC_Os05g24880
Os.15265.1.A1_at--20--9611Chr05:14335579..14335603 (25 bp)
TCATATGTATAGACCATGACGGTAT
LOC_Os05g24880
Target Sequence 
AACATCGCTCTTGTTAAGAATTGGACAATTCATGGTTTGTACTGGGGAAGNTACTTCACTCATCGGCCACCTGTACTCAT
TGACTCCCTCAATGAACTCTTTTCATGGCTTTCAAAGGGGTTGATAAAAATCCAGATTTCCCACACTTACAGGCTCCCTG
AGGCACATNTCGCTTTCGCAGCCCTGAGAGACAGGAAGGCCGTTGGTAAAGTGATGATTGTGATGGGCTCACCAGCAAAA
TCAAGACTCTAACGCCCTTCAGGGTTCATCAGGGTTCTATTCAAAACCATACATCTATGCACATGTCATATGTATAGACC
ATGACGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15265.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis