Browse Element(s) Details


Os.15271.1.S3_s_at

Description gb:AK062438.1
DB_XREF= gi:32972456
TID=Os.15271.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-A09, full insert sequence.
FL= gb:AK069301.1 gb:AK068744.1 gb:AK066706.1 gb:AK100968.1 gb:AK062438.1 gb:AK058724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3694011/11MIF4G domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein
LOC_Os07g36970OsAffx.29313.1.S1_at1/117+22129943..22132080hypothetical protein
LOC_Os07g36980OsAffx.5555.1.S1_at11/117+22139063..22140237protein kinase family protein, putative
LOC_Os07g36980Os.12664.1.S1_at1/117+22139063..22140237protein kinase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006413biological_processtranslational initiation
GO:0009615biological_processresponse to virus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15271.1.S3_s_at--1026--551Chr07:22118384..22118408 (25 bp)
ATCCGTGCTCGAAGGCGCATGCTTG
LOC_Os07g36940
Os.15271.1.S3_s_at--287--4591Chr07:22118398..22118422 (25 bp)
GCGCATGCTTGGGAACATTAGGTTG
LOC_Os07g36940
Os.15271.1.S3_s_at--782--711Chr07:22118447..22118471 (25 bp)
ATGTTGACAGAACGCATCATGCATG
LOC_Os07g36940
Os.15271.1.S3_s_at--784--7971Chr07:22118593..22118617 (25 bp)
GGATGCGTACTTTGATATAATGCTG
LOC_Os07g36940
Os.15271.1.S3_s_at--299--1171Chr07:22118630..22118654 (25 bp)
AGTCAGCAATTATCTTCCCGTGTTA
LOC_Os07g36940
Os.15271.1.S3_s_at--1095--10631Chr07:22118644..22118668 (25 bp)
TTCCCGTGTTAGGTTCATGCTGAGA
LOC_Os07g36940
Os.15271.1.S3_s_at--344--10011Chr07:22118787..22118811 (25 bp)
TAGCTCGTGGCTCAGTTGTTGGTTC
LOC_Os07g36940
Os.15271.1.S3_s_at--400--10111Chr07:22118836..22118860 (25 bp)
TATGGATTATGGTCCTCGTGGCTCA
LOC_Os07g36940
Os.15271.1.S3_s_at--603--4911Chr07:22118873..22118897 (25 bp)
GCTTCTCCAAGTTCTCAGCAAGTTG
LOC_Os07g36940
Os.15271.1.S3_s_at--907--8431Chr07:22118897..22118921 (25 bp)
GGCCATAGAGGAATGCCTTCGCATT
LOC_Os07g36940
Os.15271.1.S3_s_at--349--7851Chr07:22118933..22118957 (25 bp)
GGTACCCAAGATATCCGGTTTGAAG
LOC_Os07g36940
Target Sequence 
ATCCGTGCTCGAAGGCGCATGCTTGGGAACATTAGGTTGATTGGGGAATTGTACAAAAAGAGGATGTTGACAGAACGCAT
CATGCATGAATGCATTAAAAAATTGCTGGGAAATTATCAGAACCCTGATGAAGAGAACATTGAAGCACTGTGCAAATTGA
TGAGCACAATTGGAGAGATGATAGACCATGCAAAGGCTAAGGAGCATATGGATGCGTACTTTGATATAATGCTGAAGCTT
TCAACAAGTCAGCAATTATCTTCCCGTGTTAGGTTCATGCTGAGAGATTCAATTGATCTCAGGAAAAATAAATGGCAGCA
AAGGCGTAAGGTGGAAGGCCCAAAGAAAATTGATGAGGTGCACAGGGATGCAGCTCAGGAACGACATGCTCAGTCGAGTA
GGTTAGCTCGTGGCTCAGTTGTTGGTTCTGGTCCAAGGCGAGGAGCTGCACCTATGGATTATGGTCCTCGTGGCTCAGCA
GCAGCATTGGCTTCTCCAAGTTCTCAGCAAGTTGGCCATAGAGGAATGCCTTCGCATTCCCGAGGGTTTGGTACCCAAGA
TATCCGGTTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15271.1.S3_s_at     

Putative homologies in rice

Putative homologies in arabidopsis