Browse Element(s) Details


Os.15306.1.S1_a_at

Description gb:AK071221.1
DB_XREF= gi:32981244
TID=Os.15306.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.1 (P0456B03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088C02, full insert sequence.
FL= gb:AB096083.1 gb:AK060461.1 gb:AK071221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3287011/11Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32850Os.27361.1.S1_at11/118+20226720..20233601Propionyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
LOC_Os08g32860NANA8+20239247..20239629hypothetical protein
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15306.1.S1_a_at--744--1691Chr08:20251981..20252005 (25 bp)
AGCCAAGGTGCTACCATTCTGACTG
LOC_Os08g32870
Os.15306.1.S1_a_at--152--7691Chr08:20252009..20252114 (25 bp)
GGGTTAGACCCAAGCATCTGGAGAA
LOC_Os08g32870
Os.15306.1.S1_a_at--614--2831Chr08:20252180..20252204 (25 bp)
AAGTTTTTGGTCCAGTGCTCTGTGT
LOC_Os08g32870
Os.15306.1.S1_a_at--100--5211Chr08:20252236..20252363 (25 bp)
GAATTGGCCAACGATACTCATTATG
LOC_Os08g32870
Os.15306.1.S1_a_at--395--331Chr08:20252249..20252376 (25 bp)
ATACTCATTATGGTCTGGCTGGTGC
LOC_Os08g32870
Os.15306.1.S1_a_at--174--8611Chr08:20252371..20252395 (25 bp)
TGGTGCTGTGCTTTCCGGTGACCGC
LOC_Os08g32870
Os.15306.1.S1_a_at--677--8931Chr08:20252389..20252413 (25 bp)
TGACCGCGAGCGATGCCAGAGATTA
LOC_Os08g32870
Os.15306.1.S1_a_at--544--9811Chr08:20252412..20252707 (25 bp)
TAACTGAGGAGATCGATGCCGGAAT
LOC_Os08g32870
Os.15306.1.S1_a_at--614--151Chr08:20252706..20252730 (25 bp)
ATTATCTGGGTGAACTGCTCGCAAC
LOC_Os08g32870
Os.15306.1.S1_a_at--23--7591Chr08:20252896..20252920 (25 bp)
GGGCATTGACAACTACCTAAGCGTC
LOC_Os08g32870
Os.15306.1.S1_a_at--984--2851Chr08:20252925..20252949 (25 bp)
AAGTGACGGAGTACGCCTCCGATGA
LOC_Os08g32870
Target Sequence 
AGCCAAGGTGCTACCATTCTGACTGGTGGGGTTAGACCCAAGCATCTGGAGAAAGGTTTCTATATTGAACCCACAATCAT
TACTGATGTCGATACATCAATGCAAATTTGGAGGGAAGAAGTTTTTGGTCCAGTGCTCTGTGTGAAAGAATTTAGCACTG
AAGAAGAAGCCATTGAATTGGCCAACGATACTCATTATGGTCTGGCTGGTGCTGTGCTTTCCGGTGACCGCGAGCGATGC
CAGAGATTAACTGAGGAGATCGATGCCGGAATTATCTGGGTGAACTGCTCGCAACCCTGCTTCTGCCAAGCTCCATGGGG
CGGGAACAAGCGCAGCGGCTTTGGACGCGAGCTCGGAGAAGGGGGCATTGACAACTACCTAAGCGTCAAGCAAGTGACGG
AGTACGCCTCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15306.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis