Browse Element(s) Details


Os.15353.1.S1_at

Description gb:BM038058
DB_XREF= gi:16753679
DB_XREF=U002C03
CLONE=U002C03
TID=Os.15353.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15353 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g119404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11890OsAffx.16216.1.S1_at11/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11890Os.52782.1.S1_at1/117+6598090..6601771Cytochrome P450 family protein
LOC_Os07g11900Os.4414.1.S1_x_at7/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11900Os.8502.5.S1_x_at5/117+6607538..6607993Prolamin PPROL 4A precursor, putative
LOC_Os07g11910Os.4414.1.S1_x_at11/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11910Os.8502.5.S1_x_at5/117+6609440..6610040Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.4414.1.S1_x_at11/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11920Os.8502.5.S1_x_at5/117+6611439..6612050Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein
LOC_Os07g11980OsAffx.16217.1.S1_x_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980OsAffx.16217.2.S1_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_at7/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_x_at6/117+6639949..6641380hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15353.1.S1_at--1064--1471NONE
AGCAACGAGGGCAGACAGAGCCTAT
NONE
Os.15353.1.S1_at--591--6131NONE
GAGGGCAGACAGAGCCTATATGAAG
NONE
Os.15353.1.S1_at--1130--3811Chr01:11774343..11774364 (22 bp)
CTGCCGGTACCCACACATATATCTA
NONE
Os.15353.1.S1_at--128--7851Chr09:1257543..1257563 (21 bp)
GGTACCCACACATATATCTACACAT
NONE
Os.15353.1.S1_at--800--9091NONE
TGCTCTGCAGGCTTAGATCTGTGGA
NONE
Os.15353.1.S1_at--175--9491NONE
TCTGCAGGCTTAGATCTGTGGAGGT
NONE
Os.15353.1.S1_at--122--3471Chr01:11774227..11774246 (20 bp)
CAGGCTTAGATCTGTGGAGGTAATT
NONE
Os.15353.1.S1_at--717--2093Chr07:6617507..6617531 (25 bp)
ACATCGCTGATGTCAGATCTGTCCA
LOC_Os07g11940
Os.15353.1.S1_at--754--9332Chr07:6617510..6617531 (22 bp)
TCGCTGATGTCAGATCTGTCCACGA
LOC_Os07g11940
Os.15353.1.S1_at--390--4752Chr07:6617512..6617537 (25 bp)
GCTGATGTCAGATCTGTCCACGACA
LOC_Os07g11940
Os.15353.1.S1_at--785--6272Chr07:6617515..6617540 (25 bp)
GATGTCAGATCTGTCCACGACAGGC
LOC_Os07g11940
Target Sequence 
AGCAACGAGGGCAGACAGAGCCTATATGAAGGCTACGTCACCAACACTGGCGCATGGACCGACGAGGCCGTGGACCGCTG
CCGGTACCCACACATATATCTACACATATATATCCACCATCTTCACCAACACTCATCATGCATGGAGAACGTGAAGCGAA
GACGACGAGAAGACCACAAGTAGCTTAATCGGAGGTGCTCTGCAGGCTTAGATCTGTGGAGGTAATTAACTGGGAGTCTT
TCGAGGCCCTAGGAACCAGAAGACCACATCGCTGATGTCAGATCTGTCCACGACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis