Browse Element(s) Details


Os.15436.1.S1_at

Description gb:AK104050.1
DB_XREF= gi:32989259
TID=Os.15436.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A02, full insert sequence.
FL= gb:AK072225.1 gb:AK104050.1 gb:AK121121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1546011/11Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15420Os.55417.1.S1_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15420OsAffx.17009.1.S1_x_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15430OsAffx.5825.1.S1_at11/118+9382909..9383398hypothetical protein
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15480OsAffx.29218.1.S1_s_at8/118+9412386..9413252hypothetical protein
LOC_Os08g15480OsAffx.29576.2.S1_x_at1/118+9412386..9413252hypothetical protein
LOC_Os08g15490NANA8+9413986..9415007hypothetical protein
LOC_Os08g15500Os.14157.1.S1_at11/118+9418417..9422130expressed protein
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15436.1.S1_at--329--10311Chr08:9403244..9403268 (25 bp)
TTTCTACATCTTCTTTGGCTTTGCC
LOC_Os08g15460
Os.15436.1.S1_at--689--2031Chr08:9403273..9403297 (25 bp)
ACTTTGGCACGATTTACTGGCTTAG
LOC_Os08g15460
Os.15436.1.S1_at--269--4791Chr08:9403312..9403336 (25 bp)
GCTGCCATATCCCTAAATCCAGGAG
LOC_Os08g15460
Os.15436.1.S1_at--93--10471Chr08:9403498..9403522 (25 bp)
TTACTATTACACCTTCCTTCAATTG
LOC_Os08g15460
Os.15436.1.S1_at--886--1031Chr08:9403558..9403582 (25 bp)
AGGTGCTTCAATACCGCTTGTACGG
LOC_Os08g15460
Os.15436.1.S1_at--683--7611Chr08:9403586..9403610 (25 bp)
GGGAAAAGTACAGCTGCCTTCATAA
LOC_Os08g15460
Os.15436.1.S1_at--481--231Chr08:9404582..9404606 (25 bp)
ATATATCTGTCCTAGGATCTGCCTT
LOC_Os08g15460
Os.15436.1.S1_at--910--10671Chr08:9404605..9404629 (25 bp)
TTCCTTGCTGTTTTAGCTGCTGGAC
LOC_Os08g15460
Os.15436.1.S1_at--138--1611Chr08:9404619..9404643 (25 bp)
AGCTGCTGGACCATCTGTGGTTGAA
LOC_Os08g15460
Os.15436.1.S1_at--232--5511Chr08:9404641..9404665 (25 bp)
GAACAAATCACTCACTTAACGGCAT
LOC_Os08g15460
Os.15436.1.S1_at--923--7831Chr08:9404680..9404704 (25 bp)
GGTACATCAGTGCTTATCCTTGTTG
LOC_Os08g15460
Target Sequence 
TTTCTACATCTTCTTTGGCTTTGCCTGGTACTTTGGCACGATTTACTGGCTTAGAGTTTCTTAAAAAGGCTGCCATATCC
CTAAATCCAGGAGGTGCTTTGTATATTCCAACTAATGTACTGCTTATAGCCTTTTTCAATTACTATTACACCTTCCTTCA
ATTGGATCCTGATGATCTTAGTGAGCAATTGAAGCGGCAAGGTGCTTCAATACCGCTTGTACGGCCAGGGAAAAGTACAG
CTGCCTTCATAAAAACAGTTCTTAGTAATATATCTGTCCTAGGATCTGCCTTCCTTGCTGTTTTAGCTGCTGGACCATCT
GTGGTTGAACAAATCACTCACTTAACGGCATTTCGGGGATTTGCTGGTACATCAGTGCTTATCCTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis