Browse Element(s) Details


Os.15515.1.S1_at

Description gb:AK066212.1
DB_XREF= gi:32976230
TID=Os.15515.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058D20, full insert sequence.
FL= gb:AK066212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g328507/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein
LOC_Os05g32800OsAffx.4498.1.S1_at11/115+19130537..19131184hypothetical protein
LOC_Os05g32810OsAffx.14929.1.S1_x_at11/115+19134093..19135953expressed protein
LOC_Os05g32810Os.21778.1.S1_at11/115+19134093..19135953expressed protein
LOC_Os05g32820Os.18513.1.S1_at11/115+19138973..19141184Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os05g32830OsAffx.4499.1.S1_at11/115+19143880..19145999hypothetical protein
LOC_Os05g32830OsAffx.71.1.S1_x_at2/115+19143880..19145999hypothetical protein
LOC_Os05g32840OsAffx.4500.1.S1_at11/115+19147840..19148448hypothetical protein
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein
LOC_Os05g32870OsAffx.4501.1.S1_at11/115+19170471..19171728hypothetical protein
LOC_Os05g32880OsAffx.14931.1.S1_at11/115+19172595..19176745Response regulator receiver domain containing protein
LOC_Os05g32890OsAffx.27127.1.S1_at11/115+19178437..19182453myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15515.1.S1_at--436--351Chr05:19155166..19155273 (25 bp)
ATAAGAGGATCCGAGTGGCCGCCGC
LOC_Os05g32850
Os.15515.1.S1_at--337--6691Chr05:19155290..19155314 (25 bp)
GTTGCCAGGGCTCCATCAATTCGGA
LOC_Os05g32850
Os.15515.1.S1_at--1130--331Chr05:19155304..19155328 (25 bp)
ATCAATTCGGAGATTAACGGGTCAA
LOC_Os05g32850
Os.15515.1.S1_at--313--9711NONE
TCAAAAGGGCACAGGTACGCAGAAT
NONE
Os.15515.1.S1_at--308--7051Chr05:19156881..19156905 (25 bp)
GTGAACCTTGTTGAACCTCTTTTGG
LOC_Os05g32850
Os.15515.1.S1_at--348--3151Chr05:19156962..19156986 (25 bp)
AATTCAGAAGGCTTGGCTAACAGTA
LOC_Os05g32850
Os.15515.1.S1_at--1057--10592Chr06:20711352..20711377 (23 bp)
TTCGGATTTGTTGTCATGGTCTCAT
NONE
Os.15515.1.S1_at--282--7811Chr05:19157024..19157048 (25 bp)
GGTCTCATGGACCTTAGCGTTGAAT
LOC_Os05g32850
Os.15515.1.S1_at--278--91Chr05:19157081..19157105 (25 bp)
ATTCCGGAATCTTTTGATACATGAC
NONE
Os.15515.1.S1_at--1076--3091Chr05:19157116..19157140 (25 bp)
AATAGTACTCTTGGAATCTGAAACG
NONE
Os.15515.1.S1_at--526--151Chr05:19157131..19157155 (25 bp)
ATCTGAAACGTTGACCTGGAGGACT
NONE
Target Sequence 
ATAAGAGGATCCGAGTGGCCGCCGCCGCNGCTGCATCTTCGGTTGCCAGGGCTCCATCAATTCGGAGATTAACGGGTCAA
AAGGGCACAGGTACGCAGAATAGGCAAGGACAGCCAACTGGAATTTTGAAGAAACCTACTGAAGGTGATTCCAATCCATC
AAAACATCAGGTGAACCTTGTTGAACCTCTTTTGGAAAATAAGAGGTAACTTTAGATGTATGCATGAATATAGCGATGGA
ACGCAAAATCAAATTCAGAAGGCTTGGCTAACAGTAAATATGAGCGAACTCGTAAATTCGGATTTGTTGTCATGGTCTCA
TGGACCTTAGCGTTGAATTTTGTGTTTATGGATGATGAAAGTAGATAACAATTCCGGAATCTTTTGATACATGACAGTAG
CAACGAATAGTACTCTTGGAATCTGAAACGTTGACCTGGAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis