Browse Element(s) Details


Os.15545.1.S1_at

Description gb:AK065638.1
DB_XREF= gi:32975656
TID=Os.15545.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031O22, full insert sequence.
FL= gb:AK065638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4330011/11H1flk, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15545.1.S1_at--1009--4611Chr05:25109294..25109318 (25 bp)
GCGAGAGCAACCTTCTAGTGGACCC
LOC_Os05g43300
Os.15545.1.S1_at--524--5951Chr05:25109298..25109322 (25 bp)
GAGCAACCTTCTAGTGGACCCTGAA
LOC_Os05g43300
Os.15545.1.S1_at--1149--1731Chr05:25109303..25109327 (25 bp)
ACCTTCTAGTGGACCCTGAAGAAAT
LOC_Os05g43300
Os.15545.1.S1_at--817--9051Chr05:25109332..25109356 (25 bp)
TGCTTGGAGAGGGTGAGCCACCTCA
LOC_Os05g43300
Os.15545.1.S1_at--940--8531Chr05:25109336..25109360 (25 bp)
TGGAGAGGGTGAGCCACCTCAACGA
LOC_Os05g43300
Os.15545.1.S1_at--391--9711Chr05:25109354..25109378 (25 bp)
TCAACGACGAGGCCGACTGCGTCCA
LOC_Os05g43300
Os.15545.1.S1_at--212--1991Chr05:25109369..25109393 (25 bp)
ACTGCGTCCACGAGATCTATCCGGA
LOC_Os05g43300
Os.15545.1.S1_at--1027--1271Chr05:25109381..25109405 (25 bp)
AGATCTATCCGGACGGCTCGGCGGC
LOC_Os05g43300
Os.15545.1.S1_at--750--6151Chr05:25109416..25109440 (25 bp)
GAGGCCCTGGTCACGTCGCCGTCGA
LOC_Os05g43300
Os.15545.1.S1_at--369--3851Chr05:25109521..25109545 (25 bp)
CTGCAGCACACGATCACTCGTGTCA
LOC_Os05g43300
Os.15545.1.S1_at--701--4751Chr05:25109620..25109644 (25 bp)
GCTGCCAAATGGCTCGTGGGACACA
LOC_Os05g43300
Target Sequence 
GCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTGCTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGC
GTCCACGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCGCCGGCGCA
GCGGGAGATCATGGCGGCGGTCCAGAGGAGCGAGGCGCGCTTCCGGACCACGTCCACGCCCTCGTAGCTGCAGCACACGA
TCACTCGTGTCAGGTTGGAATTTTCTTTTCTTTTGACACGATTTCAGGTAGGANTGGGGGTATTTGGGTGTTGGTTGTGT
GTGGTGGCTGCCAAATGGCTCGTGGGACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis