Browse Element(s) Details


Os.15594.1.S1_s_at

Description gb:AK106419.1
DB_XREF= gi:32991628
TID=Os.15594.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B01, full insert sequence.
FL= gb:AK106419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3371011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15594.1.S1_s_at--104--2371Chr10:17463352..17463376 (25 bp)
AAACCTCCGCACTTTCTTGGGCGAT
LOC_Os10g33710
Os.15594.1.S1_s_at--393--2931Chr10:17463532..17463556 (25 bp)
AAGGAACACTCTCTCCAGTCGATGA
LOC_Os10g33710
Os.15594.1.S1_s_at--624--5231Chr10:17463610..17463634 (25 bp)
GAATATCTCCACATTTGTCACGCTG
LOC_Os10g33710
Os.15594.1.S1_s_at--590--1831Chr10:17463629..17463653 (25 bp)
ACGCTGGTGACAACCGGATGCCATG
LOC_Os10g33710
Os.15594.1.S1_s_at--1007--7971Chr10:17463644..17463668 (25 bp)
GGATGCCATGTCCACACACAATGAG
LOC_Os10g33710
Os.15594.1.S1_s_at--274--6831Chr10:17463689..17463713 (25 bp)
GTTTCGGTTAAACATGCTAGGGCAC
LOC_Os10g33710
Os.15594.1.S1_s_at--688--9071Chr10:17463703..17463727 (25 bp)
TGCTAGGGCACCATACACATCAAGG
LOC_Os10g33710
Os.15594.1.S1_s_at--444--1171Chr10:17463798..17463822 (25 bp)
AGATAGGAGTCGCTTTAGCCTTTAG
LOC_Os10g33710
Os.15594.1.S1_s_at--1029--10331Chr10:17463818..17463842 (25 bp)
TTTAGCATCCACTTGCTGGTGTCAA
LOC_Os10g33710
Os.15594.1.S1_s_at--458--7451Chr10:17463836..17463860 (25 bp)
GTGTCAACTGTACCCATCATACTGT
LOC_Os10g33710
Os.15594.1.S1_s_at--654--8731Chr10:17463858..17463882 (25 bp)
TGTACTTAAACCATTATCCTCTCTC
LOC_Os10g33710
Target Sequence 
AAACCTCCGCACTTTCTTGGGCGATGTCTCGGGCTTCATGCAGATAAAATAGACGTGACAACATGATACCAGTGTTCACT
GATCGGTCACTGAAACCACAGAAGATCTACCCCCCGTTGTGCCAGGAGCGCATGTGTGAATGATGCGATGCGAGTCGTGA
GCAAGAATGTTTGACATCACAAGGAACACTCTCTCCAGTCGATGACAAAAGGGTTGCTTCTCCAGGAAGGACAGGGATAT
CTTTTGTGTGTNNCACAGGAATATCTCCACATTTGTCACGCTGGTGACAACCGGATGCCATGTCCACACACAATGAGACG
TCATGTAAATGGTTTTCGTTTCGGTTAAACATGCTAGGGCACCATACACATCAAGGTAGTAGTAGGGATTTTGTTGCGAC
ATGTCACCCACATNTTTGCTCAGCNTATGATCAGTGTAGGAATTAAAGATAGGAGTCGCTTTAGCCTTTAGCATCCACTT
GCTGGTGTCAACTGTACCCATCATACTGTACTTAAACCATTATCCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15594.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis