Browse Element(s) Details


Os.15779.1.S1_at

Description gb:AK061415.1
DB_XREF= gi:32971433
TID=Os.15779.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D09, full insert sequence.
FL= gb:AK061415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3944011/11Inosine-uridine preferring nucleoside hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed
LOC_Os09g39420Os.4904.1.S1_at11/119+22665907..22670890transducin family protein, putative, expressed
LOC_Os09g39430Os.10528.1.S1_s_at11/119+22671047..22674921GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g39440Os.15779.1.S1_at11/119+22677079..22679783Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os09g39450OsAffx.18058.1.S1_at9/119+22680901..22681972hypothetical protein
LOC_Os09g39462Os.12034.1.S1_a_at11/119+22682047..22687249expressed protein
LOC_Os09g39462Os.12034.2.S1_at11/119+22682047..22687249expressed protein
LOC_Os09g39474OsAffx.18059.1.S1_at7/119+22687595..22689107expressed protein
LOC_Os09g39490OsAffx.6533.1.S1_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39490OsAffx.6533.1.S1_x_at11/119+22689793..22691494Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os09g39500Os.1386.1.S1_a_at11/119+22692186..22694404ubiquitin fusion protein, putative, expressed
LOC_Os09g39510Os.55913.1.S1_at10/119+22694639..22695664Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os09g39520OsAffx.30211.1.S1_at11/119+22697264..22697908Cupin family protein
LOC_Os09g39530Os.30306.1.A1_at11/119+22699440..22700478Cupin family protein, expressed
LOC_Os09g39540Os.37329.1.S1_at9/119+22701259..2270262340S ribosomal protein S25, putative, expressed
LOC_Os09g39550Os.4188.1.S1_at11/119+22702884..22705225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15779.1.S1_at--971--2231Chr09:22677789..22677813 (25 bp)
ACAATTCCTTTGTGACATCTGCAAG
LOC_Os09g39440
Os.15779.1.S1_at--807--9851Chr09:22677761..22677785 (25 bp)
TACAGAGACTGGCATGTCCACTCCT
LOC_Os09g39440
Os.15779.1.S1_at--683--7211Chr09:22677641..22677755 (25 bp)
GTCGATGCTCTTTTTCTCCATGATC
LOC_Os09g39440
Os.15779.1.S1_at--946--8851Chr09:22677621..22677645 (25 bp)
TGATCCTGTGAGTTTCACCGCGCTA
LOC_Os09g39440
Os.15779.1.S1_at--459--7511Chr09:22677395..22677419 (25 bp)
GTGGAATTCAGACAACCCGTGGACT
LOC_Os09g39440
Os.15779.1.S1_at--467--4051Chr09:22677360..22677384 (25 bp)
CGATCTCGGTTGCTTGGACTGTTGA
LOC_Os09g39440
Os.15779.1.S1_at--978--6691Chr09:22677334..22677358 (25 bp)
GTTCCTAAGGTTCTGGCATATGCCA
LOC_Os09g39440
Os.15779.1.S1_at--578--971Chr09:22677309..22677333 (25 bp)
AGGAGCTACTCTTCAACGCACAATG
LOC_Os09g39440
Os.15779.1.S1_at--78--8751Chr09:22677280..22677304 (25 bp)
TGTAACCGGATCAGTGTCATCTCTC
LOC_Os09g39440
Os.15779.1.S1_at--639--6511Chr09:22677175..22677199 (25 bp)
GATATCTTGGCATTGTTGTGTACTG
LOC_Os09g39440
Os.15779.1.S1_at--120--4871Chr09:22677084..22677108 (25 bp)
GCTAGTAGTACTTGCTGGTGACATG
LOC_Os09g39440
Target Sequence 
ACAATTCCTTTGTGACATCTGCAAGTTCTACAGAGACTGGCATGTCCACTCCTACGGCGTCGATGCTCTTTTTCTCCATG
ATCCTGTGAGTTTCACCGCGCTAGTTCACCCCGAGTACTTCACGTTCAAGAAGGGCGTGGTGAGGGTTGAGANCCCAGGG
CATCTGCAAGGGGCATACTTCCATGGACATGGGACTGAAGAAGTGGAATTCAGACAACCCGTGGACTGGTTACTCTCCGA
TCTCGGTTGCTTGGACTGTTGATGTTCCTAAGGTTCTGGCATATGCCAAGGAGCTACTCTTCAACGCACAATGAAAATGT
AACCGGATCAGTGTCATCTCTCTCTCTCTCTCTCTNNNNGAACTCTGATGTGATTGTGTCAGAATTGGCATGCAAATATA
TCTTTTTTTTTGGGCACAAGCAGAGATATCTTGGCATTGTTGTGTACTGCAGAAATTGTATCATATCATTTATTCTGATG
AATTGCAAATTATTGATAAANGTTCAGCAGCATCTGCTAGTAGTACTTGCTGGTGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis