Browse Element(s) Details


Os.15821.3.A1_at

Description gb:AK105753.1
DB_XREF= gi:32990962
TID=Os.15821.3
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C02, full insert sequence.
FL= gb:AK121634.1 gb:AK105753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0124010/11AML6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045836biological_processpositive regulation of meiosis
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15821.3.A1_at--905--111Chr05:138772..138796 (25 bp)
ATTCATTCTCTTCTCAGATTGACTG
LOC_Os05g01240
Os.15821.3.A1_at--887--111Chr05:138768..138792 (25 bp)
ATTCTCTTCTCAGATTGACTGCGCC
LOC_Os05g01240
Os.15821.3.A1_at--1073--9551Chr05:138764..138788 (25 bp)
TCTTCTCAGATTGACTGCGCCTTGA
LOC_Os05g01240
Os.15821.3.A1_at--985--10571Chr05:138762..138786 (25 bp)
TTCTCAGATTGACTGCGCCTTGATT
LOC_Os05g01240
Os.15821.3.A1_at--673--3751Chr05:138760..138784 (25 bp)
CTCAGATTGACTGCGCCTTGATTCA
LOC_Os05g01240
Os.15821.3.A1_at--879--6591Chr05:138756..138780 (25 bp)
GATTGACTGCGCCTTGATTCATTCA
LOC_Os05g01240
Os.15821.3.A1_at--1121--10731Chr05:138754..138778 (25 bp)
TTGACTGCGCCTTGATTCATTCATT
LOC_Os05g01240
Os.15821.3.A1_at--420--1991Chr05:138751..138775 (25 bp)
ACTGCGCCTTGATTCATTCATTTCA
LOC_Os05g01240
Os.15821.3.A1_at--955--4551Chr05:138748..138772 (25 bp)
GCGCCTTGATTCATTCATTTCATGT
LOC_Os05g01240
Os.15821.3.A1_at--43--4451Chr05:138746..138770 (25 bp)
GCCTTGATTCATTCATTTCATGTAC
LOC_Os05g01240
Os.15821.3.A1_at--492--6571Chr05:138741..138765 (25 bp)
GATTCATTCATTTCATGTACTACTA
NONE
Target Sequence 
ATTCATTCTCTTCTCAGATTGACTGCGCCTTGATTCATTCATTTCATGTACTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15821.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis