Browse Element(s) Details


Os.15920.1.S1_at

Description gb:BI800336
DB_XREF= gi:16573040
DB_XREF=H001G04
CLONE=H001G04
TID=Os.15920.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485B12.33 (P0485B12.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g607605/11hypothetical protein
LOC_Os06g428402/11hypothetical protein
LOC_Os06g416502/11hypothetical protein
LOC_Os03g566001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15920.1.S1_at--75--4051Chr01:35466429..35466453 (25 bp)
CGATTTGCACGCACGCCGAGAACGC
NONE
Os.15920.1.S1_at--1012--7734Chr06:25744820..25744845 (25 bp)
GGTGTCGATGCACACCCGCTATCAT
NONE
Os.15920.1.S1_at--982--9294Chr06:25744845..25744869 (25 bp)
TCCGCCATGGCCGTACAAGAAACGA
NONE
Os.15920.1.S1_at--331--8593Chr06:25745029..25745053 (25 bp)
TGGTCGGCGACCAAGCCCTTGATAA
LOC_Os06g42840
Os.15920.1.S1_at--568--1693Chr06:25745038..25745062 (25 bp)
ACCAAGCCCTTGATAAGGGCCCTGA
LOC_Os06g42840
Os.15920.1.S1_at--283--7011NONE
GTACTAGATTAACTTCTTCCATTTT
NONE
Os.15920.1.S1_at--7--10374Chr06:25745155..25745179 (25 bp)
TTTTGCCTAATTGTGATTTGCCAGT
NONE
Os.15920.1.S1_at--589--8671NONE
TGTGATTTGCCAGTAGAATGACCCT
NONE
Os.15920.1.S1_at--427--2991NONE
AATGACCCTGATTTTCTATGGCCTC
NONE
Os.15920.1.S1_at--656--175Chr06:25745192..25745216 (25 bp)
ATTTTCTATGGCCTCTTAGTTGGAT
NONE
Os.15920.1.S1_at--836--875Chr06:25745199..25745223 (25 bp)
ATGGCCTCTTAGTTGGATGAGATAA
NONE
Target Sequence 
CGATTTGCACGCACGCCGAGAACGCCGCGACGGCGGCGACGGTGTCGATGCACACCCGCTATCATCCGCCATGGCCGTAC
AAGAAACGACGTCNCGGCCAGCCGGCGTGGAATCCNTCGAAGAGCGCCCACNCGGAGGCGAGCTCGACGCGCGCGAGGTA
GAGCTCGACGAGCCCATCNCGGACGACGAGGCGGTGGTCGAGGCCGAGCTTGGCCGCGTGTGCGTGCACGGCCGGCNCGG
CCTCNCCNTGGTCGGCGACCAAGCCCTTGATAAGGGCCCTGAGNCAANNCGGCGNCAGTGGCGCTCCGGCGAGCTCCTCN
CCGGTNCCCTTCTGCGAGCTNCGGTAGNTGTACTAGATTAACTTCTTCCATTTTTTTTGCCTAATTGTGATTTGCCAGTA
GAATGACCCTGATTTTCTATGGCCTCTTAGTTGGATGAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis