Browse Element(s) Details


Os.16005.1.S1_at

Description gb:AK111493.1
DB_XREF= gi:37988156
TID=Os.16005.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B23, full insert sequence.
FL= gb:AK101794.1 gb:AK111493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g722202/11WD-repeat protein 33, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72170Os.11303.1.S1_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72170Os.11303.1.S1_s_at11/111+42180867..42181727Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009749biological_processresponse to glucose stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009909biological_processregulation of flower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0000166molecular_functionnucleotide binding
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16005.1.S1_at--761--2891Chr01:42201482..42201506 (25 bp)
AAGGTGGATCTAGTGCTTCTGGCAT
LOC_Os01g72220
Os.16005.1.S1_at--333--7171Chr01:42201246..42201395 (25 bp)
GTCTGAGCTCATATCAGCCGGGTAT
LOC_Os01g72220
Os.16005.1.S1_at--43--1671Chr01:42201167..42201191 (25 bp)
AGCGCCGCAATGATCTCTTGTAACT
NONE
Os.16005.1.S1_at--1096--2651Chr01:42201126..42201150 (25 bp)
AAGCCTTCTATTTTCCATGCGGTAA
NONE
Os.16005.1.S1_at--513--1011Chr01:42201022..42201046 (25 bp)
AGGATTGTTCTTATCTCTTGCACCG
NONE
Os.16005.1.S1_at--1034--10731Chr01:42201005..42201029 (25 bp)
TTGCACCGTCGGCTAGGATACATTT
NONE
Os.16005.1.S1_at--28--1011Chr01:42200991..42201015 (25 bp)
AGGATACATTTTGCTGCCCTTGGAC
NONE
Os.16005.1.S1_at--1119--7571Chr01:42200961..42200985 (25 bp)
GGGCTGTGCTGTAACAAACCTGTCC
NONE
Os.16005.1.S1_at--1112--9811Chr01:42200933..42200957 (25 bp)
TAACAGCTTGTTTCTGCTCCCTATT
NONE
Os.16005.1.S1_at--106--5251NONE
GAATCATTTTGTCTGGCCCAGTGAA
NONE
Os.16005.1.S1_at--899--151Chr01:42200800..42200824 (25 bp)
ATTTGATTGGTTGACGGCGTACGCT
NONE
Target Sequence 
AAGGTGGATCTAGTGCTTCTGGCATGCAAAACTTTCCTATGGNAGGCATGTACAACAGGCCTCAGGGANAAATGCCTCCA
CAAGCACAAGCACAGATGACATCCATCCCTGGTCTGAGCTCATATCAGCCGGGTATGGGCAATGTGGGCCTTCCGCCGCC
ACCCCCACAGCATCCACCGCCTCGCGGTTCAGCGCCGCAATGATCTCTTGTAACTGTGCAATGATGATTGGAAGCCTTCT
ATTTTCCATGCGGTAAAACATATGTAGTATGATCGTATTCGAGGAAGAGANGAGTCTCCAGCAAACGGAGACGGATATCT
TGGATAATGATAGTTAGGATTGTTCTTATCTCTTGCACCGTCGGCTAGGATACATTTTGCTGCCCTTGGACTGAACGGGC
TGTGCTGTAACAAACCTGTCCACCTAACAGCTTGTTTCTGCTCCCTATTTATGCTGCTCNTGTTGTATTAGTTCTTATGC
TACTGAGGTTTTCAACATAGACGGAGGCTATCAAGCAGTTTTGNGTGAGAANNGAATCATTTTGTCTGGCCCAGTGAATT
TGATTGGTTGACGGCGTACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis