Browse Element(s) Details


Os.16101.1.S1_at

Description gb:AK062976.1
DB_XREF= gi:32972994
TID=Os.16101.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E10, full insert sequence.
FL= gb:AK062976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g385002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class
LOC_Os03g38534NANA3+21346727..21347610hypothetical protein
LOC_Os03g38540Os.34624.2.S1_s_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38540Os.34624.1.S1_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16101.1.S1_at--1039--1511Chr01:37278054..37278078 (25 bp)
AGCAGGAGCGCCGATTCAGTGGCTT
NONE
Os.16101.1.S1_at--1035--8811Chr01:37278120..37278144 (25 bp)
TGATATTACCCAGGTTTGCTTCCCA
NONE
Os.16101.1.S1_at--77--9072Chr03:21328516..21328540 (25 bp)
TGCTTCCCATCATTTTTGTCAATTA
LOC_Os03g38500
Os.16101.1.S1_at--577--3111Chr01:37278160..37278184 (25 bp)
AATTTGGCTCCTGTTGCTAGCAGCA
NONE
Os.16101.1.S1_at--344--412Chr03:21328565..21328589 (25 bp)
ATCAGTCCTGGAAGCATTGGCAACA
LOC_Os03g38500
Os.16101.1.S1_at--464--4931Chr01:37278333..37278357 (25 bp)
GCTTGTGCTTTAGAAATCTTCCGTT
NONE
Os.16101.1.S1_at--332--1291Chr01:37278369..37278393 (25 bp)
AGATGACTTGTCTCTGGTAGTTGGA
NONE
Os.16101.1.S1_at--1076--171Chr01:37278449..37278473 (25 bp)
ATCTAAGGTAATTCCCATTCGGGCA
NONE
Os.16101.1.S1_at--303--111Chr01:37278465..37278489 (25 bp)
ATTCGGGCATCACAACCTGTTCTTG
NONE
Os.16101.1.S1_at--344--2871Chr01:37278513..37278537 (25 bp)
AAGTGATCTCTCTTGTCCTGTGCTC
NONE
Os.16101.1.S1_at--1153--9091Chr01:37278533..37278557 (25 bp)
TGCTCGGTAGCCCTGATTGGAACAT
NONE
Target Sequence 
AGCAGGAGCGCCGATTCAGTGGCTTCAACCATAAATTTTTGCTGCCNATAACAGCNATAAGCTCCCTGATATTACCCAGG
TTTGCTTCCCATCATTTTTGTCAATTAATTTGGCTCCTGTTGCTAGCAGCANATCAGTCCTGGAAGCATTGGCAACAGTA
CGCNGCTATGGTTGCTGTAATCANAGAAGTCAAGCACGCATGCATGAGCAGAAAATGGAAGAGACGAAGCTAGAGGGTTT
GGGACTGATTCCAGAATNATCGGCCAATTCAATTTCAGTAGCTTGTGCTTTAGAAATCTTCCGTTGTGAAGACATTAGAT
GACTTGTCTCTGGTAGTTGGAGCATGTGGTTGTGTTCAATAGATAAATCATGCAAGGTGTAAAGACCAGAATCCCTATCT
AAGGTAATTCCCATTCGGGCATCACAACCTGTTCTTGTCTCAGCTCGGGGAAGTTTTGTCAAGTGATCTCTCTTGTCCTG
TGCTCGGTAGCCCTGATTGGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis