Browse Element(s) Details


Os.16146.1.S1_s_at

Description gb:AK099070.1
DB_XREF= gi:32984279
TID=Os.16146.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013167F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013167F21, full insert sequence.
FL= gb:AK066098.1 gb:AK099070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0353010/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16146.1.S1_s_at--536--4651Chr05:1472757..1472781 (25 bp)
GCGTCGTTGGATCCAAGGCTTGCCC
LOC_Os05g03530
Os.16146.1.S1_s_at--1148--2931Chr05:1472771..1472795 (25 bp)
AAGGCTTGCCCCAAGATCGCCAATT
LOC_Os05g03530
Os.16146.1.S1_s_at--201--2811Chr05:1472783..1472807 (25 bp)
AAGATCGCCAATTGGTCACCCATGG
LOC_Os05g03530
Os.16146.1.S1_s_at--1123--3151Chr05:1472792..1472816 (25 bp)
AATTGGTCACCCATGGATTACCTCC
LOC_Os05g03530
Os.16146.1.S1_s_at--667--8571Chr05:1472805..1472829 (25 bp)
TGGATTACCTCCAGCATGATCTCAC
LOC_Os05g03530
Os.16146.1.S1_s_at--772--4051NONE
CGATGGGACTACTACTGGTGGCGAT
NONE
Os.16146.1.S1_s_at--622--5971Chr05:1474337..1474361 (25 bp)
GAGAACAGCTCTACTAGGCTAGCTA
LOC_Os05g03530
Os.16146.1.S1_s_at--407--8311Chr05:1474353..1474377 (25 bp)
GGCTAGCTATTTGTATTCTACCCTT
LOC_Os05g03530
Os.16146.1.S1_s_at--672--6871Chr05:1474365..1474389 (25 bp)
GTATTCTACCCTTGTATGATATTTT
LOC_Os05g03530
Os.16146.1.S1_s_at--131--731Chr05:1474380..1474404 (25 bp)
ATGATATTTTGATCTTGCCCAAGAA
LOC_Os05g03530
Os.16146.1.S1_s_at--1021--6991Chr05:1474443..1474467 (25 bp)
GTACTCTGAACATCTGAAAGTCTTC
LOC_Os05g03530
Target Sequence 
GCGTCGTTGGATCCAAGGCTTGCCCCAAGATCGCCAATTGGTCACCCATGGATTACCTCCAGCATGATCTCACCCCAATC
CAGATGATTAATTGTATTGTATCCATAATAGTCGGGGTGCTGCAAGCCGCCGACGGCGTGCGCGTACAGCGGCGGGGTGG
CCGTCGGAGCGCAGGACGAGGACTGCTTCCGGTGGAACAACGCGGCGGGGATACTGTGCTACGGGTGCGANTCGTGCAGG
GCCGGGGTGATGGAGAAGGTGAGGGAGGATTGGCACAAGATCTCGGTGCTCAACGTCATGGTGCTGGTGGTGCTCATCTG
CATCTGCGCCTGCGGCTGCTGCGCCTTCAGGAACGCCCGCCGCTCCGTCTCCGAGTACCCTTACGGGGTAAACCGCATGC
ACAAGATCCACCCCCGATGGGACTACTACTGGTGGCGATGGTGGCGTGATAGGAGAGAACAGCTCTACTAGGCTAGCTAT
TTGTATTCTACCCTTGTATGATATTTTGATCTTGCCCAAGAAAATTAANATAGTTGAGAGTTGATTCGTTCCTCAATATT
GTACTCTGAACATCTGAAAGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16146.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis