Browse Element(s) Details


Os.16203.1.S1_at

Description gb:AK110631.1
DB_XREF= gi:32995840
TID=Os.16203.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.14 (P0020E09.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B11, full insert sequence.
FL= gb:AK110631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7459011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16203.1.S1_at--79--1951Chr01:43521381..43521405 (25 bp)
ACTGGAACTCCAACCTCCGGAGGTG
LOC_Os01g74590
Os.16203.1.S1_at--713--3291Chr01:43521341..43521365 (25 bp)
CAAATTCAAATCCAAGGACCCTGAT
LOC_Os01g74590
Os.16203.1.S1_at--131--9491Chr01:43521317..43521341 (25 bp)
TCTGCTGCCCGATCCAATTAATATT
LOC_Os01g74590
Os.16203.1.S1_at--596--10491Chr01:43521300..43521324 (25 bp)
TTAATATTCCACCTGACTGCATCGT
LOC_Os01g74590
Os.16203.1.S1_at--459--891Chr01:43521210..43521234 (25 bp)
AGGCCCAGGAGACACTACCGTCGCT
LOC_Os01g74590
Os.16203.1.S1_at--793--3331Chr01:43521105..43521129 (25 bp)
CACTGGCAGCTGCTTCTGAGATCCA
LOC_Os01g74590
Os.16203.1.S1_at--87--8911Chr01:43521089..43521113 (25 bp)
TGAGATCCAAGACGGCAGCAGCAGA
LOC_Os01g74590
Os.16203.1.S1_at--686--491Chr01:43521059..43521083 (25 bp)
ATCGGCATCGCGTGTCATGTTGCAG
LOC_Os01g74590
Os.16203.1.S1_at--210--9631Chr01:43521045..43521069 (25 bp)
TCATGTTGCAGGTGATGCGACAGAT
LOC_Os01g74590
Os.16203.1.S1_at--294--4951Chr01:43520930..43520954 (25 bp)
GCATTCATTTTCAGACTTTGTTCAA
LOC_Os01g74590
Os.16203.1.S1_at--1053--5691Chr01:43520917..43520941 (25 bp)
GACTTTGTTCAAACATCGATCGATC
LOC_Os01g74590
Target Sequence 
ACTGGAACTCCAACCTCCGGAGGTGCCTCCNCCNCCAANCCAAATTCAAATCCAAGGACCCTGATCTGCTGCCCGATCCA
ATTAATATTCCACCTGACTGCATCGTCGTGCTCAACGACGACGACGAGCCTGCAGATCGGCCGGTCACGCCGCCCGCCAT
CATCCAGGCCCAGGCCCAGGAGACACTACCGTCGCTGACCCTGAGCCTTAGCCTTTCCCTGCCCGGCGCCGCTGCTGCTG
CTGCTGAGGTTGAGGTGGCNCCGCCGCCGCCCAGGGCACTGGCAGCTGCTTCTGAGATCCAAGACGGCAGCAGCAGATCA
TCATCGGCATCGCGTGTCATGTTGCAGGTGATGCGACAGATGGTGAGGGAAGAGGTGCAGCGCNATACTGCGCAGCTCGC
CTACTCCCTCATGGCCCNTGGCCTCCTGCAGCCGTAGGCCCCCAAATTAGGAGCATTCATTTTCAGACTTTGTTCAAACA
TCGATCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis