Browse Element(s) Details


Os.16235.1.S1_at

Description gb:AK108140.1
DB_XREF= gi:32993349
TID=Os.16235.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E08, full insert sequence.
FL= gb:AK108140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4914010/11Glycosyltransferase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49110OsAffx.5954.4.S1_x_at7/112+30026085..30027236hypothetical protein
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16235.1.S1_at--493--3691Chr02:30047256..30047280 (25 bp)
CTCATCAGCCAATGAAACCGTCAAA
LOC_Os02g49140
Os.16235.1.S1_at--792--5531Chr02:30047269..30047293 (25 bp)
GAAACCGTCAAAGCTGTTACTGTTA
LOC_Os02g49140
Os.16235.1.S1_at--12--4751Chr02:30047281..30047305 (25 bp)
GCTGTTACTGTTAAACCGTGCATAC
LOC_Os02g49140
Os.16235.1.S1_at--49--3431Chr02:30047308..30047332 (25 bp)
CAGACAGCTTTTGCTGGTGTGTGCG
LOC_Os02g49140
Os.16235.1.S1_at--578--7751Chr02:30047334..30047358 (25 bp)
GGTGAGTTTTCGAGGTTGATTGCTT
LOC_Os02g49140
Os.16235.1.S1_at--350--6651Chr02:30047348..30047372 (25 bp)
GTTGATTGCTTGCTAGTACAGCGGT
LOC_Os02g49140
Os.16235.1.S1_at--638--10791Chr02:30047388..30047412 (25 bp)
TTGTTCTTCGTGTTGATACAGCCAA
LOC_Os02g49140
Os.16235.1.S1_at--608--6651Chr02:30047399..30047423 (25 bp)
GTTGATACAGCCAAACAGGTCTATA
LOC_Os02g49140
Os.16235.1.S1_at--625--6591Chr02:30047428..30047452 (25 bp)
GATTGCTTTGATCTTCGATGAGTGA
LOC_Os02g49140
Os.16235.1.S1_at--487--5391NONE
GAAGCACATGTTGAAGGCCTCAGGT
NONE
Os.16235.1.S1_at--442--891Chr02:30047468..30047489 (22 bp)
AGGCCTCAGGTGTCTCGCTCATCAA
LOC_Os02g49140
Target Sequence 
CTCATCAGCCAATGAAACCGTCAAAGCTGTTACTGTTAAACCGTGCATACANCAGACAGCTTTTGCTGGTGTGTGCGGGG
TGAGTTTTCGAGGTTGATTGCTTGCTAGTACAGCGGTNCAGTAAAATTTGTTTTGTTCTTCGTGTTGATACAGCCAAACA
GGTCTATATAATGATTGCTTTGATCTTCGATGAGTGAAGCACATGTTGAAGGCCTCAGGTGTCTCGCTCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis