Browse Element(s) Details


Os.16318.1.S1_at

Description gb:AK101088.1
DB_XREF= gi:32986297
TID=Os.16318.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024L02, full insert sequence.
FL= gb:AK101088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2203011/11Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein
LOC_Os12g22020OsAffx.19771.1.S1_at11/1112+12380541..12386677hypothetical protein
LOC_Os12g22020OsAffx.10906.1.S1_at2/1112+12380541..12386677hypothetical protein
LOC_Os12g22030Os.16318.1.S1_at11/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22030Os.46481.2.S1_x_at1/1112+12390098..12393967Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os12g22040OsAffx.31828.1.S1_at11/1112+12405281..12406063hypothetical protein
LOC_Os12g22050OsAffx.8201.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.8201.1.S1_x_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22050OsAffx.5392.1.S1_at1/1112+12406492..12411346retrotransposon protein, putative, unclassified
LOC_Os12g22060OsAffx.19772.1.S1_at11/1112+12412580..12415353expressed protein
LOC_Os12g22070NANA12+12416092..12416837retrotransposon protein, putative, unclassified
LOC_Os12g22080OsAffx.31829.3.S1_at11/1112+12417605..12420771hypothetical protein
LOC_Os12g22080OsAffx.28686.1.S1_at1/1112+12417605..12420771hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006544biological_processglycine metabolism
GO:0006563biological_processL-serine metabolism
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0009626biological_processhypersensitive response
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16318.1.S1_at--215--2991Chr12:12391453..12391477 (25 bp)
AATGTCACCTGGTGGTGTCCGCATT
LOC_Os12g22030
Os.16318.1.S1_at--916--8111Chr12:12390531..12390555 (25 bp)
GGACTTTGTACAGATCGCCGAGTTC
LOC_Os12g22030
Os.16318.1.S1_at--1155--7371Chr12:12390494..12390518 (25 bp)
GTGACCATCTGCTTGGATGTTCAGA
LOC_Os12g22030
Os.16318.1.S1_at--130--4671Chr12:12390465..12390489 (25 bp)
GCGTGGCAAGCTTCTCAAGTACTTC
LOC_Os12g22030
Os.16318.1.S1_at--309--1211Chr12:12390385..12390409 (25 bp)
AGTTTGCCACTTCATTCGAGATGCC
LOC_Os12g22030
Os.16318.1.S1_at--242--1291Chr12:12390367..12390391 (25 bp)
AGATGCCTGGCTTCAGGGTATCCGA
LOC_Os12g22030
Os.16318.1.S1_at--440--6551Chr12:12390329..12390353 (25 bp)
GATTAGGCGGCATCGTGCACATCGT
LOC_Os12g22030
Os.16318.1.S1_at--899--4551Chr12:12390279..12390303 (25 bp)
GCGCCCTTGAAACCTGATTACTGTG
LOC_Os12g22030
Os.16318.1.S1_at--283--151Chr12:12390263..12390287 (25 bp)
ATTACTGTGGCGTGAATCGTGGTGT
LOC_Os12g22030
Os.16318.1.S1_at--1094--8971Chr12:12390227..12390251 (25 bp)
TGAACTCTGGGTAGTCTCTAACCGC
LOC_Os12g22030
Os.16318.1.S1_at--663--8571Chr12:12390186..12390210 (25 bp)
TGGTTGTGCCATTCAGTCGTTAAAT
LOC_Os12g22030
Target Sequence 
AATGTCACCTGGTGGTGTCCGCATTGGTACACCTGCCATGACATCAAGGGGTTTGGTAGAGGAGGACTTTGTACAGATCG
CCGAGTTCCTTCACCAGGCAGTGACCATCTGCTTGGATGTTCAGAAGGAGCGTGGCAAGCTTCTCAAGTACTTCAACGAG
GGCCTGGAGAACANCAAGGACATTGAGGACCTCAGGGCGGAGGTGGAGAAGTTTGCCACTTCATTCGAGATGCCTGGCTT
CAGGGTATCCGACATGAAGTACAAGGATTAGGCGGCATCGTGCACATCGTCCTCTTTCTCTTGCCCTGAACGTTGGCGCC
CTTGAAACCTGATTACTGTGGCGTGAATCGTGGTGTATGGATTTTGCTGAACTCTGGGTAGTCTCTAACCGCTTTCGTCT
ACCTGAGCTGGTTGTGCCATTCAGTCGTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis