Browse Element(s) Details


Os.16549.2.S1_at

Description gb:AK099595.1
DB_XREF= gi:32984804
TID=Os.16549.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0487E11.14 (P0487E11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044O19, full insert sequence.
FL= gb:AK099595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g366701/11Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36620Os.7587.2.A1_at11/119+21132310..21133869expressed protein
LOC_Os09g36630Os.24040.1.S1_at11/119+21134009..21136312expressed protein
LOC_Os09g36640OsAffx.30156.1.S1_at11/119+21141767..21142906hypothetical protein
LOC_Os09g36650OsAffx.18014.1.S1_at11/119+21145536..21148594expressed protein
LOC_Os09g36660NANA9+21149216..21150900expressed protein
LOC_Os09g36670Os.49083.1.S1_x_at11/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36670Os.16549.2.S1_at1/119+21151255..21153806Peptidyl-prolyl cis-trans isomerase 3, putative, expressed
LOC_Os09g36680Os.9417.1.S1_at11/119+21155477..21157464Ribonuclease T2 family protein, expressed
LOC_Os09g36690Os.52946.1.S1_at4/119+21161762..21162475hypothetical protein
LOC_Os09g36690OsAffx.13417.1.S1_x_at2/119+21161762..21162475hypothetical protein
LOC_Os09g36700Os.12922.1.S1_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36700Os.47388.1.S1_s_at11/119+21164738..21167166Ribonuclease T2 family protein, expressed
LOC_Os09g36710Os.3737.1.S1_at11/119+21171211..21173585Proteasome subunit alpha type 7, putative, expressed
LOC_Os09g36720OsAffx.6494.1.S1_at10/119+21174222..21174647hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16549.2.S1_at--678--5411NONE
GAACCACGGTGTGTTCCGCTTCAGA
NONE
Os.16549.2.S1_at--1051--6271Chr01:13229280..13229304 (25 bp)
GATGTAGATCGCTCTTACCTGTATA
NONE
Os.16549.2.S1_at--224--3171Chr01:13229245..13229269 (25 bp)
AATTGCAGCAACCATTTGTGAGCCT
NONE
Os.16549.2.S1_at--315--5851Chr01:13229226..13229250 (25 bp)
GAGCCTGTAAAGTTAACTGTCCGCA
NONE
Os.16549.2.S1_at--1030--5991Chr01:13229181..13229205 (25 bp)
GAGAGTTGGCATGCCCTTCGGTTCA
NONE
Os.16549.2.S1_at--555--7891Chr01:13229162..13229186 (25 bp)
GGTTCAGCATTGACACGAGCCACGC
NONE
Os.16549.2.S1_at--182--5871Chr01:13229146..13229170 (25 bp)
GAGCCACGCTCCTGATGATGCATAA
NONE
Os.16549.2.S1_at--24--4831Chr01:13229078..13229102 (25 bp)
GCTCTTCTCCATTATTTCTTTCTAG
NONE
Os.16549.2.S1_at--909--10751Chr01:13228991..13229015 (25 bp)
TTGAGCACCATTTTGCAGCAGTTTG
NONE
Os.16549.2.S1_at--659--10251Chr01:13228970..13228994 (25 bp)
TTTGTGCCCTCGTATCGGTATCATA
NONE
Os.16549.2.S1_at--378--7692Chr09:21152207..21152286 (24 bp)
GGGTATACTTTGTCTTGGATGTTCA
LOC_Os09g36670
Target Sequence 
GAACCACGGTGTGTTCCGCTTCAGAGAAGGCCAAAAACATTGCTCCAGAGAAGGCCAAATAGAGTAATCTCAAACCTGAT
GCAAATGGTTCAAGGTGATGTAGATCGCTCTTACCTGTATATGTTGCGTGAAATTGCAGCAACCATTTGTGAGCCTGTAA
AGTTAACTGTCCGCAAGGATTAGATCTGAACAACTGAGAGTTGGCATGCCCTTCGGTTCAGCATTGACACGAGCCACGCT
CCTGATGATGCATAATTATTTCTATAAATATGAGCTTCTGGAGAAGCAGTGAATATGTGCTCTTCTCCATTATTTCTTTC
TAGTGTCATTGGCTGAGATGTGACTGTTGTAAAACAAATAGGAAGGAATAGTTTTTCTTTTTTAATTGAGCACCATTTTG
CAGCAGTTTGTGCCCTCGTATCGGTATCATACACAATTGTAATTCGTTTATTCATAGTTTTGCAGGGTATACTTTGTCTT
GGATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16549.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis