Browse Element(s) Details


Os.16959.1.S1_at

Description gb:AK071354.1
DB_XREF= gi:32981377
TID=Os.16959.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095B09, full insert sequence.
FL= gb:AK059291.1 gb:AK071354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4313011/11ARP2/3 regulatory protein subunit NAPP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43110Os.27140.2.S1_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.2.S2_at11/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110Os.27140.1.S1_a_at10/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43110OsAffx.10048.1.S1_x_at1/118+27122649..27127172retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g43120Os.55221.1.S1_at11/118+27135240..27144656ABC transporter, putative, expressed
LOC_Os08g43130Os.16959.1.S1_at11/118+27144876..27157609ARP2/3 regulatory protein subunit NAPP, putative, expressed
LOC_Os08g43140NANA8+27159606..27160197expressed protein
LOC_Os08g43150Os.57358.1.S1_at10/118+27162718..27163363expressed protein
LOC_Os08g43160Os.189.1.S1_at11/118+27163376..27164991TCP family transcription factor containing protein, expressed
LOC_Os08g43170Os.32782.1.S1_at10/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43170Os.51088.1.S1_x_at8/118+27169405..27173992Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os08g43180Os.6501.1.A1_at11/118+27174069..27176594expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16959.1.S1_at--148--5871Chr08:27145439..27145463 (25 bp)
GAGCCTGGATACCACAGTTCATCTG
LOC_Os08g43130
Os.16959.1.S1_at--730--9431Chr08:27145418..27145442 (25 bp)
TCTGGGTCCCAGTACGATGAAGGTT
LOC_Os08g43130
Os.16959.1.S1_at--569--8371Chr08:27145348..27145372 (25 bp)
GGCGATCTGGGCCACTAGATTACAC
LOC_Os08g43130
Os.16959.1.S1_at--823--4711Chr08:27145271..27145295 (25 bp)
GCTGGCTCAGGCTCACTACAGAGAT
LOC_Os08g43130
Os.16959.1.S1_at--375--211Chr08:27145248..27145272 (25 bp)
ATTTGCTGTGTCAAGATCTGGCCCC
LOC_Os08g43130
Os.16959.1.S1_at--1022--3011Chr08:27145116..27145140 (25 bp)
AATGCTCCCATTCGTCTTTGTAGAG
LOC_Os08g43130
Os.16959.1.S1_at--1043--731Chr08:27145078..27145102 (25 bp)
ATGTTATTTAGCTCCTTTGCGTGAA
LOC_Os08g43130
Os.16959.1.S1_at--114--6891Chr08:27145035..27145059 (25 bp)
GTATTTACGTACCTAGTGCTCTTGT
LOC_Os08g43130
Os.16959.1.S1_at--463--751Chr08:27145002..27145026 (25 bp)
ATGTATGGTACCTATTGCTCTTGTA
LOC_Os08g43130
Os.16959.1.S1_at--77--9571Chr08:27144984..27145008 (25 bp)
TCTTGTAAGTAAACCCTCCTCTGTT
LOC_Os08g43130
Os.16959.1.S1_at--870--6891Chr08:27144907..27144931 (25 bp)
GTATAATTGCCTTCTATCCCAGATG
LOC_Os08g43130
Target Sequence 
GAGCCTGGATACCACAGTTCATCTGGGTCCCAGTACGATGAAGGTTATGAAGGGGATAGAAGAACTGGAGAGAGGCAACT
CCGAAGCANTGAGGCGATCTGGGCCACTAGATTACACTGGAACCAGGAAAGTGAAGTTTGTGGAGGGTTCAAGTTCTGGA
AGCCATGGGGCTGGCTCAGGCTCACTACAGAGATTTGCTGTGTCAAGATCTGGCCCCCTATCCTACAAATAAGATCATGT
TAACAAGTAACAACAGCATTCTACTGGCAATCATAGTTTGCCAGCATCAGTATCTAGCAATTTGTATTTGAGTGGACTCC
AGTCAATGCTCCCATTCGTCTTTGTAGAGCATCTGAGCATATATGTTATTTAGCTCCTTTGCGTGAAGTAATATGTATTC
TAGCTGTATTTACGTACCTAGTGCTCTTGTAAGTCTANATGTATGGTACCTATTGCTCTTGTAAGTAAACCCTCCTCTGT
TGCTACATGAATTAGCAATGTGCTAGTTGTATGTCTGTTAATGTAAATGGATTGTATAATTGCCTTCTATCCCAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis