Browse Element(s) Details


Os.17038.2.S1_x_at

Description gb:AK068883.1
DB_XREF= gi:32978908
TID=Os.17038.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170M12, full insert sequence.
FL= gb:AK068883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g122809/11hAT dimerisation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12240OsAffx.1988.1.S1_at8/111+6686511..6690668hypothetical protein
LOC_Os01g12240Os.23045.1.S1_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12240OsAffx.19438.2.S1_x_at1/111+6686511..6690668hypothetical protein
LOC_Os01g12250Os.36177.1.S1_at10/111+6690832..6693597expressed protein
LOC_Os01g12260Os.3748.1.S1_at9/111+6696264..6700173Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g12270Os.3749.1.S1_at3/111+6701205..6701468expressed protein
LOC_Os01g12280Os.17038.2.S1_x_at9/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.1.S1_at8/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12280Os.17038.2.S1_at1/111+6702623..6707354hAT dimerisation domain-containing protein, putative, expressed
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17038.2.S1_x_at--287--5091Chr01:6703190..6703214 (25 bp)
GCACCCTGACCTTCCAAAGAGATTG
LOC_Os01g12280
Os.17038.2.S1_x_at--485--4511Chr01:6703107..6703131 (25 bp)
GCCGACCAAGCCTATGTGCATTACA
LOC_Os01g12280
Os.17038.2.S1_x_at--340--10491Chr01:6703087..6703111 (25 bp)
TTACAATTTCATGCTCCATTCCGAC
LOC_Os01g12280
Os.17038.2.S1_x_at--526--531Chr01:6703032..6703056 (25 bp)
ATCGCGCTGGATGCTATCGACATGA
LOC_Os01g12280
Os.17038.2.S1_x_at--758--1191Chr01:6702914..6702938 (25 bp)
AGTTTGGTGGTTCGATCTTTGGCAC
LOC_Os01g12280
Os.17038.2.S1_x_at--1070--711Chr01:6702887..6702911 (25 bp)
ATGATACTCTGTTCGGCTTGTGACA
LOC_Os01g12280
Os.17038.2.S1_x_at--632--8291Chr01:6702873..6702897 (25 bp)
GGCTTGTGACAGCTTTCAGTTGATC
LOC_Os01g12280
Os.17038.2.S1_x_at--185--8231Chr01:6702836..6702860 (25 bp)
GGCAATGTGTTGCTTCTGATGTACA
LOC_Os01g12280
Os.17038.2.S1_x_at--895--3591Chr01:6702793..6702817 (25 bp)
CATTCCATCTCCATATATCTTTGCT
LOC_Os01g12280
Os.17038.2.S1_x_at--1106--5531NONE
GAAACTGAACTTTTGATGGCCCTTT
NONE
Os.17038.2.S1_x_at--656--871NONE
ATGGCCCTTTCTTGTCCCTGAATGA
NONE
Target Sequence 
GCACCCTGACCTTCCAAAGAGATTGGAGCATAATCGTTCGGAATCATTCAGAGAAGCGCAACAAGTTGGACAAGGAGGCT
TTGGCCGACCAAGCCTATGTGCATTACAATTTCATGCTCCATTCCGACTCCANAGATGAAGAAGGGTGATGGGGATCCCA
TCGCGCTGGATGCTATCGACATGACCTCGCCATGGGTTGAGGACTCTGACAGTCCANAACCTCGCCCAGTGGCTCGACAG
GTTCCCGTCTNGCCNTTGGATGGTGACTTGAACACNCAGNNAGTTTGGTGGTTCGATCTTTGGCACCNANATGATACTCT
GTTCGGCTTGTGACAGCTTTCAGTTGATCAGCTCCTCGTCCGGCAATGTGTTGCTTCTGATGTACAAGTTATCTCTGTAT
GTATCATTCCATCTCCATATATCTTTGCTAGACTAGATTCTATATTTGTTTATACCAAGGTGAAAACCTGTTACTTGTTT
TGGATCGGACATGAGAAGCTGATAACCTGGAGTATATGGATTATCGAGATTGGAGAACATGAAACTGAACTTTTGATGGC
CCTTTCTTGTCCCTGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17038.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis