Browse Element(s) Details


Os.17118.1.A1_at

Description gb:BQ906966
DB_XREF= gi:22305744
DB_XREF=M022H09
CLONE=M022H09
TID=Os.17118.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17118 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178427.1 (A.thaliana) similar to axi 1 protein from Nicotiana tabacum (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0741011/11Axi 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein
LOC_Os01g07460OsAffx.23148.1.S1_at11/111+3532885..3533269hypothetical protein
LOC_Os01g07470OsAffx.17666.1.S1_at1/111+3537643..3538074hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17118.1.A1_at--187--6671Chr01:3512155..3512179 (25 bp)
GTTGCAGCCCAACCGATGAATATTG
LOC_Os01g07410
Os.17118.1.A1_at--906--10051Chr01:3512199..3512223 (25 bp)
TAGTCGACGCGAGCACTTTTTGTAC
LOC_Os01g07410
Os.17118.1.A1_at--995--5091Chr01:3512211..3512235 (25 bp)
GCACTTTTTGTACAGCTGACCAGAG
LOC_Os01g07410
Os.17118.1.A1_at--1126--1331Chr01:3512232..3512256 (25 bp)
AGAGTTCTTCCTTCATACCGAGAAT
LOC_Os01g07410
Os.17118.1.A1_at--189--1031Chr01:3512264..3512288 (25 bp)
AGGTACAGGCTAGTTGACATCTCAA
LOC_Os01g07410
Os.17118.1.A1_at--165--2851Chr01:3512288..3512312 (25 bp)
AATGTTTATAACTGGATTCCCTCAC
LOC_Os01g07410
Os.17118.1.A1_at--745--5391Chr01:3512330..3512354 (25 bp)
GAAGCTCCAAATCAACGGGTTCAGA
LOC_Os01g07410
Os.17118.1.A1_at--923--5991Chr01:3512365..3512389 (25 bp)
GAGACGAGCATCCAATCTGCTCATT
LOC_Os01g07410
Os.17118.1.A1_at--935--3751Chr01:3512384..3512408 (25 bp)
CTCATTTCTCCCATCAGTTATACTT
LOC_Os01g07410
Os.17118.1.A1_at--598--7811Chr01:3512432..3512456 (25 bp)
GGTCAGGTTTTCCATTTCATTCCAT
LOC_Os01g07410
Os.17118.1.A1_at--47--10611Chr01:3512459..3512483 (25 bp)
TTCTGCTTCTTTTGTTTCCATTGTT
LOC_Os01g07410
Target Sequence 
GTTGCAGCCCAACCGATGAATATTGGTTCCTGCAGCGTCTGCCATAGTCGACGCGAGCACTTTTTGTACAGCTGACCAGA
GTTCTTCCTTCATACCGAGAATTTACTTCAGGTACAGGCTAGTTGACATCTCAAATGTTTATAACTGGATTCCCTCACAG
AAATAAAGCTGAAAAGAAGCTCCAAATCAACGGGTTCAGACTTCAAAGAAGAGACGAGCATCCAATCTGCTCATTTCTCC
CATCAGTTATACTTATGTAATTCTTGATTAGTTAGTTGGTCAGGTTTTCCATTTCATTCCATTCTTCTGCTTCTTTTGTT
TCCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17118.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis