Browse Element(s) Details


Os.17158.1.S1_at

Description gb:BI812278
DB_XREF= gi:16578183
DB_XREF=D005A05
CLONE=D005A05
TID=Os.17158.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative high-affinity potassium transporter (OSJNBa0052O12.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7049010/11Potassium transporter 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein
LOC_Os01g70460Os.15295.3.S1_x_at11/111+41134008..41135229expressed protein
LOC_Os01g70470Os.5458.1.A1_at11/111+41139395..41140977expressed protein
LOC_Os01g70470Os.9623.2.S1_x_at1/111+41139395..41140977expressed protein
LOC_Os01g70480Os.32749.1.S1_at11/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.32749.2.S1_x_at10/111+41149129..41150671hypothetical protein
LOC_Os01g70480Os.14525.1.S1_at1/111+41149129..41150671hypothetical protein
LOC_Os01g70490Os.17158.1.S1_at10/111+41152561..41157146Potassium transporter 5, putative, expressed
LOC_Os01g70500Os.31293.1.S1_at10/111+41160454..41161710expressed protein
LOC_Os01g70509NANA1+41163696..41164196NA
LOC_Os01g70520Os.26537.1.S1_a_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.2.S1_x_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.26537.1.S1_at11/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70520Os.51558.1.S1_x_at1/111+41169123..41175197Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g70540OsAffx.8479.1.S1_at7/111+41178852..41184665retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17158.1.S1_at--270--8191Chr01:41156661..41156685 (25 bp)
GGAAGAACTTCAGGCAACCAGAGAA
LOC_Os01g70490
Os.17158.1.S1_at--733--1271Chr01:41156685..41156709 (25 bp)
AGATCACATGTGTTCCCCATAATAG
LOC_Os01g70490
Os.17158.1.S1_at--1117--7411Chr01:41156694..41156718 (25 bp)
GTGTTCCCCATAATAGACTGTTGCG
LOC_Os01g70490
Os.17158.1.S1_at--425--1951Chr01:41156710..41156734 (25 bp)
ACTGTTGCGGGTAGGAATGACGTAC
LOC_Os01g70490
Os.17158.1.S1_at--92--3011Chr01:41156725..41156749 (25 bp)
AATGACGTACGAGATCTAGACTGAT
LOC_Os01g70490
Os.17158.1.S1_at--549--6251Chr01:41156747..41156771 (25 bp)
GATGGTGATGTTCTTGGAAATCTGA
LOC_Os01g70490
Os.17158.1.S1_at--767--1171Chr01:41156775..41156799 (25 bp)
AGTACTCAGTAACTAATTATCGCAT
LOC_Os01g70490
Os.17158.1.S1_at--221--3071Chr01:41156862..41156886 (25 bp)
AATCAGCATTCCTAATCCTGACCAT
LOC_Os01g70490
Os.17158.1.S1_at--551--1731Chr01:41156882..41156906 (25 bp)
ACCATACCACAGAACATGCATGGAG
LOC_Os01g70490
Os.17158.1.S1_at--572--6571NONE
GATTCGTATGATGTTTTCTTTTGGA
NONE
Os.17158.1.S1_at--966--2571Chr01:41157025..41157049 (25 bp)
AACGTCCCTAGAGATTGATAGTAAT
LOC_Os01g70490
Target Sequence 
GGAAGAACTTCAGGCAACCAGAGAAGATCACATGTGTTCCCCATAATAGACTGTTGCGGGTAGGAATGACGTACGAGATC
TAGACTGATGGTGATGTTCTTGGAAATCTGAGTAAGTACTCAGTAACTAATTATCGCATAGAAGATGTTGTTCTCAGTGC
TGAGTGAGGAAATGCACAAGCNAAAAAAGGAGGGGATGAGAAATCAGCATTCCTAATCCTGACCATACCACAGAACATGC
ATGGAGATTCGTATGATGTTTTCTTTTGGAGAATCAGAACTTCAATATGTAACATAGATTGTATAGTAGTATAGCATATA
CACTAATACACAGGAAGAATAACTTGTTATTTTGATCANNANGNAACGTCCCTAGAGATTGATAGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis