Browse Element(s) Details


Os.172.2.S1_a_at

Description gb:AK072534.1
DB_XREF= gi:32982557
TID=Os.172.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for chitinase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131P07, full insert sequence.
FL= gb:AK072534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5645011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.172.2.S1_a_at--94--6171Chr04:33431053..33431076 (24 bp)
GAGGAGGCTGTCGACATGACCAGAT
LOC_Os04g56450
Os.172.2.S1_a_at--488--5851Chr04:33431036..33431060 (25 bp)
GACCAGATCGATTCATGACCCAGAA
LOC_Os04g56450
Os.172.2.S1_a_at--1120--8711Chr04:33430946..33430970 (25 bp)
TGTCGTGCGCTTCTTGCATGGGCAA
LOC_Os04g56450
Os.172.2.S1_a_at--679--1811Chr04:33430881..33430905 (25 bp)
ACCCAATGTAGTTGTGTACCACCAT
LOC_Os04g56450
Os.172.2.S1_a_at--111--1011Chr04:33430802..33430826 (25 bp)
AGGATACGTGTATTCTGATGGCTGA
LOC_Os04g56450
Os.172.2.S1_a_at--251--7371Chr04:33430730..33430754 (25 bp)
GTGACCGATCACCATAGTTCGTTGC
LOC_Os04g56450
Os.172.2.S1_a_at--285--291Chr04:33430717..33430741 (25 bp)
ATAGTTCGTTGCTTTTGACCCTGGA
LOC_Os04g56450
Os.172.2.S1_a_at--1011--10251Chr04:33430692..33430716 (25 bp)
TTTGATGGTCGTGTTGTATTGCTAC
LOC_Os04g56450
Os.172.2.S1_a_at--791--10711Chr04:33430674..33430698 (25 bp)
TTGCTACGGGAGACTGGATCGTTTC
LOC_Os04g56450
Os.172.2.S1_a_at--453--7951Chr04:33430659..33430683 (25 bp)
GGATCGTTTCCCTAGGTTCAATGTA
LOC_Os04g56450
Os.172.2.S1_a_at--425--1911Chr04:33430635..33430659 (25 bp)
ACGTGGATATTACTCCTCTATTTAT
LOC_Os04g56450
Target Sequence 
GAGGAGGCTGTCGACATGACCAGATCGATTCATGACCCAGAAGAAGCTGCAAAGAAGCTCTTGCAAGAGGCCTACAAGAG
GGAGAGCAGTGACAACATAACTTGTGTTGTCGTGCGCTTCTTGCATGGGCAAGGGAGTAGTGGATATGCTTAAAAAACAA
CTGGTAAAAGTTACCCAATGTAGTTGTGTACCACCATGTATACATGTTTTAATTCAAATCTCACGGGGTTAAATGGAGAG
AAACTCGGAGTAGGATACGTGTATTCTGATGGCTGAAGTAAGCTGAAGGGTGAGTATGCCTTAGGTTAACAATAAGTTTG
CTGGTGACCGATCACCATAGTTCGTTGCTTTTGACCCTGGATTTGATGGTCGTGTTGTATTGCTACGGGAGACTGGATCG
TTTCCCTAGGTTCAATGTACGTGGATATTACTCCTCTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.172.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis