Browse Element(s) Details


Os.17219.2.S1_s_at

Description gb:AK066860.1
DB_XREF= gi:32976878
TID=Os.17219.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088K08, full insert sequence.
FL= gb:AK066860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0968011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein
LOC_Os11g09640Os.24499.1.S1_at11/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640Os.24499.2.S1_at8/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09640OsAffx.30905.1.S1_at1/1111+5148214..5151946F-box domain containing protein, expressed
LOC_Os11g09650NANA11+5153036..5154375retrotransposon protein, putative, unclassified
LOC_Os11g09660NANA11+5155250..5156647retrotransposon protein, putative, unclassified
LOC_Os11g09670OsAffx.18767.1.S1_at11/1111+5159981..5162213F-box domain containing protein, expressed
LOC_Os11g09680Os.17219.2.S1_s_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680OsAffx.30905.2.S1_at11/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.1.S1_at10/1111+5164307..5166740expressed protein
LOC_Os11g09680Os.17219.2.S1_x_at3/1111+5164307..5166740expressed protein
LOC_Os11g09690OsAffx.30905.3.S1_at11/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.2.S1_at7/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690Os.17219.2.S1_x_at4/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09690OsAffx.30905.4.S1_at1/1111+5169041..5171650F-box domain containing protein
LOC_Os11g09700Os.32285.1.S1_at2/1111+5173963..5174537Flavonol 3-O-glucosyltransferase, putative
LOC_Os11g09710OsAffx.30906.1.S1_at11/1111+5178191..5179575expressed protein
LOC_Os11g09720Os.46053.2.S1_x_at8/1111+5180249..5183483transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g09730NANA11+5187897..5188196retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17219.2.S1_s_at--381--7051Chr11:5164448..5164472 (25 bp)
GTAAACAGGCGCCTAGTATCCCTCA
LOC_Os11g09680
Os.17219.2.S1_s_at--513--9831Chr11:5164447..5164471 (25 bp)
TAAACAGGCGCCTAGTATCCCTCAT
LOC_Os11g09680
Os.17219.2.S1_s_at--178--2411Chr11:5164446..5164470 (25 bp)
AAACAGGCGCCTAGTATCCCTCATG
LOC_Os11g09680
Os.17219.2.S1_s_at--90--2131Chr11:5164444..5164468 (25 bp)
ACAGGCGCCTAGTATCCCTCATGCA
LOC_Os11g09680
Os.17219.2.S1_s_at--684--891Chr11:5164442..5164466 (25 bp)
AGGCGCCTAGTATCCCTCATGCAGC
LOC_Os11g09680
Os.17219.2.S1_s_at--727--4452Chr11:5332070..5332094 (25 bp)
GCCTAGTATCCCTCATGCAGCTGAT
NONE
Os.17219.2.S1_s_at--231--3712Chr11:5332068..5332092 (25 bp)
CTAGTATCCCTCATGCAGCTGATAA
NONE
Os.17219.2.S1_s_at--676--10052Chr11:5332067..5332091 (25 bp)
TAGTATCCCTCATGCAGCTGATAAA
NONE
Os.17219.2.S1_s_at--20--1172Chr11:5332066..5332090 (25 bp)
AGTATCCCTCATGCAGCTGATAAAG
NONE
Os.17219.2.S1_s_at--369--6912Chr11:5164433..5164457 (25 bp)
GTATCCCTCATGCAGCTGATAAAGC
LOC_Os11g09680
Os.17219.2.S1_s_at--470--10151Chr11:5164432..5164456 (25 bp)
TATCCCTCATGCAGCTGATAAAGCC
LOC_Os11g09680
Target Sequence 
GTAAACAGGCGCCTAGTATCCCTCATGCAGCTGATAAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17219.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis