Browse Element(s) Details


Os.17230.2.S1_at

Description gb:AK072725.1
DB_XREF= gi:32982748
TID=Os.17230.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135H18, full insert sequence.
FL= gb:AK072725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4213011/11folate/biopterin transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g42110Os.52749.1.S1_at8/114+24712990..24716977Cell division control protein 48 homolog B, putative, expressed
LOC_Os04g42120Os.17183.1.A1_s_at7/114+24717117..24719232hypothetical protein
LOC_Os04g42130Os.17230.2.S1_at11/114+24721420..24724003folate/biopterin transporter family protein, expressed
LOC_Os04g42140Os.4805.1.S1_a_at11/114+24727065..24733133Eukaryotic initiation factor, putative, expressed
LOC_Os04g42150OsAffx.4054.1.S1_at11/114+24739562..24740223hypothetical protein
LOC_Os04g42160OsAffx.26426.1.S1_at11/114+24742827..24743033hypothetical protein
LOC_Os04g42170OsAffx.26427.1.S1_at11/114+24744139..24744477hypothetical protein
LOC_Os04g42180NANA4+24745426..24748303transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17230.2.S1_at--757--9312Chr05:18086650..18086674 (25 bp)
TCCCGGCAGAGATGCTTCAGGACAA
NONE
Os.17230.2.S1_at--151--7092Chr05:18086701..18086725 (25 bp)
GTCAAGACACTGCTGAATTTTCCGT
NONE
Os.17230.2.S1_at--505--3132Chr05:18086716..18086740 (25 bp)
AATTTTCCGTCCTTGTCGCAGATGA
NONE
Os.17230.2.S1_at--169--6292Chr05:18086736..18086760 (25 bp)
GATGATTCTAGCTGTCATGCTCTGA
NONE
Os.17230.2.S1_at--855--9612Chr05:18086750..18086774 (25 bp)
TCATGCTCTGAATGTGGCTGTCGAA
NONE
Os.17230.2.S1_at--154--7852Chr05:18086808..18086832 (25 bp)
GGTACTGTGGAGTTGATTCCTCTCA
NONE
Os.17230.2.S1_at--151--5832Chr05:18086847..18086871 (25 bp)
GACCGTGGGAGTTGACTGACAAGCT
NONE
Os.17230.2.S1_at--95--332Chr05:18086882..18086906 (25 bp)
ATACTTGTCTTCCATCCATGATTCA
NONE
Os.17230.2.S1_at--1120--2952Chr05:18086924..18086948 (25 bp)
AATGGCGTTCTGGTTCTGTTCTCCA
NONE
Os.17230.2.S1_at--443--6712Chr05:18086941..18086965 (25 bp)
GTTCTCCACTCTTTGGTAGACTAGT
NONE
Os.17230.2.S1_at--806--8672Chr05:18087120..18087144 (25 bp)
TGTGTTTTGTTCAAGCGTCCTTTTG
NONE
Target Sequence 
TCCCGGCAGAGATGCTTCAGGACAATGAATCTACTGAAGCTAGGAAAGGAGGTCAAGACACTGCTGAATTTTCCGTCCTT
GTCGCAGATGATTCTAGCTGTCATGCTCTGAATGTGGCTGTCGAAGATGAAAGAATCAAAGTGGTCGATGCTGGAACGGG
TACTGTGGAGTTGATTCCTCTCATGAACGAGCTACAAGACCGTGGGAGTTGACTGACAAGCTCATGAACAGGATACTTGT
CTTCCATCCATGATTCATTCTATACCAAATTACCAATGGCGTTCTGGTTCTGTTCTCCACTCTTTGGTAGACTAGTTCTT
TATGTATCATCAGCAACAGCACATCAATAGGTTATAGGTGAAACAACAGTTAGTTTTCCTTTCATTTTTTGTAACAGAAA
GAAGCACAGTATCATTTGGAAGGATATTGAGGCAGTTCCTTCGGGTTTTTTTTGGGTGTGTGTGTTTTTGTGTTTTGTTC
AAGCGTCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17230.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis