Browse Element(s) Details


Os.17288.1.S1_at

Description gb:AK070115.1
DB_XREF= gi:32980139
TID=Os.17288.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E24, full insert sequence.
FL= gb:AK070115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6225011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed
LOC_Os03g62220NANA3+35182499..35182903hypothetical protein
LOC_Os03g62224OsAffx.21120.1.S1_x_at2/113+35187189..35187906hypothetical protein
LOC_Os03g62230OsAffx.3671.1.S1_at11/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62230OsAffx.13726.1.S1_x_at1/113+35190215..35191372zinc finger protein, putative
LOC_Os03g62240Os.20575.1.S1_at11/113+35191810..35194145expressed protein
LOC_Os03g62250Os.17288.1.S1_at11/113+35194672..35197631zinc finger family protein, putative, expressed
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17288.1.S1_at--456--4951Chr03:35196304..35196328 (25 bp)
GCATATTTGGTGGAACACCCCGCAA
LOC_Os03g62250
Os.17288.1.S1_at--193--1371Chr03:35195441..35195465 (25 bp)
AGACCTACCCTTTTTCATCAGAAGA
LOC_Os03g62250
Os.17288.1.S1_at--1083--3311Chr03:35195379..35195403 (25 bp)
CACTTGTCTTCAGGGCGAGGATGGT
LOC_Os03g62250
Os.17288.1.S1_at--1147--7111Chr03:35195260..35195380 (25 bp)
GTCATGATGGTAGCCCTGAGTGCAA
LOC_Os03g62250
Os.17288.1.S1_at--224--6111Chr03:35195243..35195267 (25 bp)
GAGTGCAATTTATGTCCTGAGCCCC
LOC_Os03g62250
Os.17288.1.S1_at--1075--7571Chr03:35195104..35195128 (25 bp)
GGGCTGTTTGGATTCTTCGATGACT
LOC_Os03g62250
Os.17288.1.S1_at--970--671Chr03:35195085..35195109 (25 bp)
ATGACTTCCTCGTGCTGCTGATCGT
LOC_Os03g62250
Os.17288.1.S1_at--404--5211Chr03:35195001..35195025 (25 bp)
GAATTGCTGCTGCACATTACGTGAT
LOC_Os03g62250
Os.17288.1.S1_at--19--8511Chr03:35194977..35195001 (25 bp)
TGGCAGATGGAGTACTTGCGTCCCT
LOC_Os03g62250
Os.17288.1.S1_at--769--7431Chr03:35194842..35194866 (25 bp)
GTGTATTCTATTTCGCTATGCTATG
LOC_Os03g62250
Os.17288.1.S1_at--792--671Chr03:35194785..35194809 (25 bp)
ATGAGACCGATTGCTTTTTCTTTAG
LOC_Os03g62250
Target Sequence 
GCATATTTGGTGGAACACCCCGCAACCTGACTCAGAGGTTGCAAGACCTACCCTTTTTCATCAGAAGACTGTTCAGGGAA
CTACTGGATCCCCAGAGGACCCTCCCACTTGTCTTCAGGGCGAGGATGGTCATGATGGTAGCCCTGAGTGCAATTTATGT
CCTGAGCCCCATCGACATTCTTCCTGAAAACGTGCTGGGGCTGTTTGGATTCTTCGATGACTTCCTCGTGCTGCTGATCG
TGTTCCTCCACCTTGCTGCTGTCTACCGTTCTCTGCTGCTCTACCGCCACGGAGGCCNCTGAATTGCTGCTGCACATTAC
GTGATGGCAGATGGAGTACTTGCGTCCCTGGCTGACGTTNTGAGACAAGAGATATTTCATTTGTGCTGGAAGAGATTGCT
AGCTAAAGTCGATGATGATTGATGGTACGAATGATGGCGGCNAGTAGTTTCTCTCCCCCTGTGTATTCTATTTCGCTATG
CTATGCCNTTGTTTGGTGATATTCACATGGTGGATTTAATGAGACCGATTGCTTTTTCTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis