Browse Element(s) Details


Os.17303.1.S1_at

Description gb:AK065602.1
DB_XREF= gi:32975620
TID=Os.17303.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026O16, full insert sequence.
FL= gb:AK065602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0814011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08080Os.167.1.S1_at11/116+3918533..3926284Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080Os.55953.1.S1_at1/116+3918533..3926284Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090Os.27371.1.A1_at11/116+3923743..3926917Heparanase-like protein 3 precursor, putative, expressed
LOC_Os06g08100NANA6+3931093..3931803hypothetical protein
LOC_Os06g08110Os.53987.1.S1_at11/116+3933042..3936230nodulin, putative, expressed
LOC_Os06g08120OsAffx.16867.1.S1_at1/116+3940688..3942448expressed protein
LOC_Os06g08120Os.25011.1.A1_at1/116+3940688..3942448expressed protein
LOC_Os06g08130OsAffx.4762.1.S1_at10/116+3945826..3946219hypothetical protein
LOC_Os06g08140Os.17303.1.S1_at11/116+3946928..3951246Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17303.1.S1_at--141--8411Chr06:3947498..3947522 (25 bp)
GGCGCCTCCAAGAACACAACGATGT
LOC_Os06g08140
Os.17303.1.S1_at--640--2211Chr06:3947483..3947507 (25 bp)
ACAACGATGTGAAGTCCTGCTGCAG
LOC_Os06g08140
Os.17303.1.S1_at--925--8331Chr06:3947321..3947345 (25 bp)
GGCTGAACAGCTTGAGGACACTCCT
LOC_Os06g08140
Os.17303.1.S1_at--402--711Chr06:3947287..3947311 (25 bp)
ATGATGGCCATCTTCTTTGCATTCT
LOC_Os06g08140
Os.17303.1.S1_at--745--191Chr06:3947255..3947279 (25 bp)
ATTTCTCTAGTATGTTGCATTGCCG
LOC_Os06g08140
Os.17303.1.S1_at--992--6911Chr06:3947220..3947244 (25 bp)
GTATGTAGTGATCTCGGCACCTCAT
LOC_Os06g08140
Os.17303.1.S1_at--1117--7391Chr06:3947169..3947193 (25 bp)
GTGATGACACCAGCTATTATTCTTG
LOC_Os06g08140
Os.17303.1.S1_at--742--6111Chr06:3947050..3947074 (25 bp)
GAGTGCCCAAGCTCACAGTGTCATA
LOC_Os06g08140
Os.17303.1.S1_at--740--7451Chr06:3947033..3947057 (25 bp)
GTGTCATATTTTTCTCCTATTCTTG
LOC_Os06g08140
Os.17303.1.S1_at--847--1551Chr06:3946990..3947014 (25 bp)
AGCTACTCAGCTCCTGGGTAATTGA
LOC_Os06g08140
Os.17303.1.S1_at--226--8971Chr06:3946933..3946957 (25 bp)
TGAAATTGCCGCCAATTGGCTCATC
LOC_Os06g08140
Target Sequence 
GGCGCCTCCAAGAACACAACGATGTGAAGTCCTGCTGCAGGGAGATCNTTGAGGAGGCAATAAAGCGAGGCNGCCACCGA
CAACTTAACCGCGGTGTTGGTCTCCTTCCACCTGGAGGCTCCTCCCCAGGTCAGAGTGAGCCGACCCGGTAGGGTGGCGC
GCAGCATTTCGGCTGAGGGGCTGAACAGCTTGAGGACACTCCTGAGAAACCAATGATGGCCATCTTCTTTGCATTCTTGC
TGCAATTTCTCTAGTATGTTGCATTGCCGAGTGTTAATTGTATGTAGTGATCTCGGCACCTCATTGTTGTTAGATGTTAC
CACCATTGTTGTGATGACACCAGCTATTATTCTTGTTGGTAATTAAGCCAACGAACATGAGTTCTGAGCTCTCAAATTGT
GAGAAATTCTAAGCGGCTGTAACAAGTTGAGCTCTGTGAAGAAAGAAGTGAGTGCCCAAGCTCACAGTGTCATATTTTTC
TCCTATTCTTGTCTGTAAATAAAAATGTCAGCTACTCAGCTCCTGGGTAATTGAACGTTGACCATGTAAAAGATACCCCC
ATTGAGTGAAATTGCCGCCAATTGGCTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis