Browse Element(s) Details


Os.17313.1.S1_at

Description gb:AK066803.1
DB_XREF= gi:32976821
TID=Os.17313.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075G07, full insert sequence.
FL= gb:AK066803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0523011/11ATP-dependent RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed
LOC_Os12g05270OsAffx.31592.1.S1_at11/1112+2345444..2346277Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17313.1.S1_at--513--10811Chr12:2320027..2320051 (25 bp)
TTGTACCGTGACCAATGACTCGCAT
LOC_Os12g05230
Os.17313.1.S1_at--120--3011Chr12:2320040..2320064 (25 bp)
AATGACTCGCATGGCAACTCTTTTA
LOC_Os12g05230
Os.17313.1.S1_at--639--8651Chr12:2320313..2320337 (25 bp)
TGGGCTGATTAATGTCCTTGTGAAA
LOC_Os12g05230
Os.17313.1.S1_at--506--10251Chr12:2320365..2320389 (25 bp)
TTTGAGGACTTCGACACTGTGTTGG
LOC_Os12g05230
Os.17313.1.S1_at--38--1971Chr12:2320380..2320404 (25 bp)
ACTGTGTTGGTTGCAGACTTGCCTC
LOC_Os12g05230
Os.17313.1.S1_at--72--2051Chr12:2320396..2320420 (25 bp)
ACTTGCCTCCTTCAGTTGACGAATA
LOC_Os12g05230
Os.17313.1.S1_at--284--9991Chr12:2320484..2320508 (25 bp)
TAGCGCTGATGCTCTGCTTGCAAAA
LOC_Os12g05230
Os.17313.1.S1_at--966--8151Chr12:2320561..2320585 (25 bp)
GGAAACTGGCATCCTCATAGCAGGA
LOC_Os12g05230
Os.17313.1.S1_at--950--7111Chr12:2320660..2320684 (25 bp)
GTCAGTTTACTGTTCCTTATCATGT
LOC_Os12g05230
Os.17313.1.S1_at--1131--991Chr12:2320703..2320727 (25 bp)
AGGATCTTCAGCCTTGTTGTATCTC
LOC_Os12g05230
Os.17313.1.S1_at--185--5271Chr12:2320746..2320770 (25 bp)
GAATGCGATCAAGTCCTAGTCTGTG
LOC_Os12g05230
Target Sequence 
TTGTACCGTGACCAATGACTCGCATGGCAACTCTTTTACCATATGCAGCAGTGTTGGGCTGATTAATGTCCTTGTGAAAG
ACTGGGAGAACATAACAACGGCAAATTTTGAGGACTTCGACACTGTGTTGGTTGCAGACTTGCCTCCTTCAGTTGACGAA
TACANTTGAAATCCTCGCTGGTGCAAGCTGTCATGTGCTTGTGGGGGAGGTGCATTGCATCTTTTCTAGCGCTGATGCTC
TGCTTGCAAAACCCTTGTCTGAGGTTCTTACAAGCTGTGGTCAGGTAGTGCCTGAATTTCTCAGGAAACTGGCATCCTCA
TAGCAGGANCGGTTTTCTCATGGCAATCATCATATAGTATACGCTACCATATTCATGGTTCTTCCAGTNACTAAACATTT
TTGTCAGTTTACTGTTCCTTATCATGTAATTCTCACAGCATAACGAGGATCTTCAGCCTTGTTGTATCTCTGCAACTTTG
TATTTTTTGAATGCGATCAAGTCCTAGTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis