Browse Element(s) Details


Os.17338.1.S1_at

Description gb:BI812638
DB_XREF= gi:16578543
DB_XREF=F007B11
CLONE=F007B11
TID=Os.17338.1
CNT=13
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17338 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174690.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0382011/11D-mannose binding lectin family protein, expressed
LOC_Os12g036409/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein
LOC_Os11g03820Os.17338.1.S1_at11/1111+1505830..1511513D-mannose binding lectin family protein, expressed
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03840Os.50555.1.S1_at1/1111+1521292..1523817D-mannose binding lectin family protein
LOC_Os11g03850NANA11+1533949..1534785pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17338.1.S1_at--747--472Chr12:1458399..1458423 (25 bp)
ATCTGGTTTACCAATAACAGCAAAG
LOC_Os12g03640
Os.17338.1.S1_at--1043--272Chr12:1458434..1458458 (25 bp)
ATAGTTATGGAGTCGTTCTTCTTGA
LOC_Os12g03640
Os.17338.1.S1_at--999--1132Chr12:1458444..1458468 (25 bp)
AGTCGTTCTTCTTGAGCTAGTGTCA
LOC_Os12g03640
Os.17338.1.S1_at--884--3052Chr12:1458572..1458596 (25 bp)
AATCATTGTGGTTAGCAGAGTTCGT
LOC_Os12g03640
Os.17338.1.S1_at--795--9992Chr12:1458584..1458608 (25 bp)
TAGCAGAGTTCGTAGATTTCAGAGT
LOC_Os12g03640
Os.17338.1.S1_at--770--7712Chr12:1458609..1458633 (25 bp)
GGGTGATGAATTCAACTACTTGCAA
LOC_Os12g03640
Os.17338.1.S1_at--1014--9832Chr12:1458647..1458671 (25 bp)
TAAAGTTGGCTGTGTCCTGCTTGGA
LOC_Os12g03640
Os.17338.1.S1_at--716--8211Chr11:1511222..1511246 (25 bp)
GGAATCAATAGTGGAGAGCCTCCTT
LOC_Os11g03820
Os.17338.1.S1_at--52--6012Chr12:1458712..1458736 (25 bp)
GAGAGCCTCCTTTCAGTTGATTTAG
LOC_Os12g03640
Os.17338.1.S1_at--601--11Chr11:1511332..1511356 (25 bp)
ATTGCGAGGACCATACTAATTCTAG
LOC_Os11g03820
Os.17338.1.S1_at--745--112Chr12:1458825..1458849 (25 bp)
ATTCTAGAAGTCTTCATTTCCTAGG
LOC_Os12g03640
Target Sequence 
ATCTGGTTTACCAATAACAGCAAAGGTTGATGTATATAGTTATGGAGTCGTTCTTCTTGAGCTAGTGTCAGGAAGACGAG
TCTTTGATTTAATCGTTGGAGAGGATAAGACGAAGGTGCATGAGATGCTCAAGAAGTTTATTAAGATGATTTGTTATAGA
TTGGACAATGAGAAATCATTGTGGTTAGCAGAGTTCGTAGATTTCAGAGTGGGTGATGAATTCAACTACTTGCAAGCAAA
AACTTTGGTAAAGTTGGCTGTGTCCTGCTTGGAGGAAGATAGGAAGAAAAGGCCAACAATGGAATCAATAGTGGAGAGCC
TCCTTTCAGTTGATTTAGCTAGAAGTTAATAAAATAATAATGTACCGAAGGGAGAATATTTATAATATTGGAGTCCCTTN
GTGGTATGTTATTGCGAGGACCATACTAATTCTAGAAGTCTTCATTTCCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis