Browse Element(s) Details


Os.17423.1.S1_at

Description gb:AK058989.1
DB_XREF= gi:32969007
TID=Os.17423.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F03, full insert sequence.
FL= gb:AK058989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5122011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17423.1.S1_at--199--1611Chr03:29252457..29252481 (25 bp)
AGCTGATCGAGCTGACCGTGGTGAT
LOC_Os03g51220
Os.17423.1.S1_at--1043--5891Chr03:29252465..29252489 (25 bp)
GAGCTGACCGTGGTGATCCGGACAA
LOC_Os03g51220
Os.17423.1.S1_at--1010--7491Chr03:29252474..29252498 (25 bp)
GTGGTGATCCGGACAACTAGTGCTC
LOC_Os03g51220
Os.17423.1.S1_at--742--551Chr03:29252480..29252504 (25 bp)
ATCCGGACAACTAGTGCTCTATACC
LOC_Os03g51220
Os.17423.1.S1_at--910--4311Chr03:29252506..29252530 (25 bp)
CCATTCTTTAGAGGGATATCTCGAA
LOC_Os03g51220
Os.17423.1.S1_at--235--7951Chr03:29252519..29252543 (25 bp)
GGATATCTCGAAAGCCATGAACTGT
LOC_Os03g51220
Os.17423.1.S1_at--623--4331Chr03:29252533..29252557 (25 bp)
CCATGAACTGTGTTGTAGTAGTACC
LOC_Os03g51220
Os.17423.1.S1_at--873--6631Chr03:29252544..29252568 (25 bp)
GTTGTAGTAGTACCATTCTTTTAGA
LOC_Os03g51220
Os.17423.1.S1_at--876--5231Chr03:29252575..29252599 (25 bp)
GAATACTGTATGACGATCTGTTGTT
LOC_Os03g51220
Os.17423.1.S1_at--1086--8931Chr03:29252585..29252609 (25 bp)
TGACGATCTGTTGTTACTGCATAAG
LOC_Os03g51220
Os.17423.1.S1_at--113--6651Chr03:29252594..29252618 (25 bp)
GTTGTTACTGCATAAGAGCTTCTAT
LOC_Os03g51220
Target Sequence 
AGCTGATCGAGCTGACCGTGGTGATCCGGACAACTAGTGCTCTATACCCCCATTCTTTAGAGGGATATCTCGAAAGCCAT
GAACTGTGTTGTAGTAGTACCATTCTTTTAGAAGCAGAGAATACTGTATGACGATCTGTTGTTACTGCATAAGAGCTTCT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis