Browse Element(s) Details


Os.17479.1.S1_at

Description gb:AK106178.1
DB_XREF= gi:32991387
TID=Os.17479.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to CHIA_CICAR ACIDIC ENDOCHITINASE PRECURSOR (P0519D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C10, full insert sequence.
FL= gb:AK106178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4932011/11Acidic endochitinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17479.1.S1_at--809--9031Chr01:28682120..28682144 (25 bp)
TGCACCGAGCGGAGGCTACATCGAC
LOC_Os01g49320
Os.17479.1.S1_at--237--1171Chr01:28682033..28682057 (25 bp)
AGTCATGCTGTGGAATCGCTGGAGA
LOC_Os01g49320
Os.17479.1.S1_at--59--5251Chr01:28682021..28682045 (25 bp)
GAATCGCTGGAGAGACGTGACCGCT
LOC_Os01g49320
Os.17479.1.S1_at--1012--1891Chr01:28682007..28682031 (25 bp)
ACGTGACCGCTGGTTATGGCGCCAA
LOC_Os01g49320
Os.17479.1.S1_at--619--10471Chr01:28681957..28681981 (25 bp)
TTAAGCTACGCCTACGAACCATTCA
LOC_Os01g49320
Os.17479.1.S1_at--789--5431Chr01:28681942..28681966 (25 bp)
GAACCATTCATATTCACAGGCGTTT
LOC_Os01g49320
Os.17479.1.S1_at--1023--10351Chr01:28681891..28681915 (25 bp)
TTTTATGGATGTTTTCCGTGCTCCG
LOC_Os01g49320
Os.17479.1.S1_at--77--8411Chr01:28681867..28681891 (25 bp)
GGCCTCCCTCCGGTAGGGATAGAAT
LOC_Os01g49320
Os.17479.1.S1_at--876--7651Chr01:28681852..28681876 (25 bp)
GGGATAGAATGTACACCGACCGGAC
LOC_Os01g49320
Os.17479.1.S1_at--619--2391Chr01:28681797..28681821 (25 bp)
AAACTATGTGTCTATGTCTGTAATG
LOC_Os01g49320
Os.17479.1.S1_at--52--7071Chr01:28681742..28681766 (25 bp)
GTAATGAACCATGTCCATCAGTCCA
LOC_Os01g49320
Target Sequence 
TGCACCGAGCGGAGGCTACATCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACT
ACGGCGGAGTCATGCTGTGGAATCGCTGGAGAGACGTGACCGCTGGTTATGGCGCCAAGTTGAAGGGGAAAGNTTTGAAA
CANAATTAAGCTACGCCTACGAACCATTCATATTCACAGGCGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGA
TGTTTTCCGTGCTCCGGCCTCCCTCCGGTAGGGATAGAATGTACACCGACCGGACNTTGTTGATTTAATTTTGNCAAGTT
GCATTTAAACTATGTGTCTATGTCTGTAATGAACTATGNTCCANAATTGCATCTAAACTGTCTGTAATGAACCATGTCCA
TCAGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis