Browse Element(s) Details


Os.17523.1.S1_at

Description gb:AK103076.1
DB_XREF= gi:32988285
TID=Os.17523.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118E02, full insert sequence.
FL= gb:AK103076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3091011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30860OsAffx.25216.1.S1_x_at11/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30860Os.33624.3.S1_x_at9/114+18250432..18255970Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g30870OsAffx.25217.2.S1_x_at10/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.25217.1.S1_x_at8/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.3.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30870OsAffx.29607.5.S1_x_at1/114+18256224..18264737transposon protein, putative, unclassified
LOC_Os04g30880Os.56204.1.S1_at11/114+18265357..18269283TBC1 domain family member 13, putative, expressed
LOC_Os04g30890NANA4+18270688..18271458gonidia forming protein GlsA, putative, expressed
LOC_Os04g30900NANA4+18272510..18276104SWIM zinc finger family protein
LOC_Os04g30910Os.17523.1.S1_at11/114+18280856..18286387SAM domain family protein, expressed
LOC_Os04g30920OsAffx.26262.1.S1_at11/114+18289013..18289867expressed protein
LOC_Os04g30920Os.56655.1.S1_at1/114+18289013..18289867expressed protein
LOC_Os04g30930OsAffx.3961.1.S1_at11/114+18302966..18306772NB-ARC domain containing protein
LOC_Os04g30940OsAffx.32166.1771.S1_s_at1/114+18307939..18309523hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17523.1.S1_at--1049--5291Chr04:18285228..18285250 (23 bp)
GAAGGCTGACAGTCCACTTGATATT
LOC_Os04g30910
Os.17523.1.S1_at--432--7011Chr04:18285277..18285301 (25 bp)
GTACTCGATTACCTTCCAGGCAGAA
LOC_Os04g30910
Os.17523.1.S1_at--1078--2691Chr04:18285429..18285449 (21 bp)
AAGCTTTGGGCATTCCGATGGGTCC
LOC_Os04g30910
Os.17523.1.S1_at--522--2811Chr04:18285929..18285953 (25 bp)
AAGATCATGCTTGCCTTGGAATCGA
LOC_Os04g30910
Os.17523.1.S1_at--938--10131Chr04:18286007..18286031 (25 bp)
TATGCTCCTCTGCTTGCTTGGTAAA
LOC_Os04g30910
Os.17523.1.S1_at--355--7831Chr04:18286026..18286050 (25 bp)
GGTAAACCCAAAGTGTCCGCATGTC
LOC_Os04g30910
Os.17523.1.S1_at--842--4991Chr04:18286044..18286068 (25 bp)
GCATGTCCTGGATACGGCGCAAGAA
LOC_Os04g30910
Os.17523.1.S1_at--595--7571Chr04:18286079..18286103 (25 bp)
GGGCGTCTTGTAATGCGTCTTCTGA
LOC_Os04g30910
Os.17523.1.S1_at--690--10591Chr04:18286098..18286122 (25 bp)
TTCTGACTAGTTGAGCATTCCGCAT
LOC_Os04g30910
Os.17523.1.S1_at--740--91Chr04:18286114..18286138 (25 bp)
ATTCCGCATTCTCAGCCAGTTTAGG
LOC_Os04g30910
Os.17523.1.S1_at--503--9751Chr04:18286191..18286215 (25 bp)
TAATTTTTATCTGGTCGGCTTGCTT
LOC_Os04g30910
Target Sequence 
GAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGG
TTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCGATGGGTCCCCGGAAGAAGATC
ATGCTTGCCTTGGAATCGAGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTATGCTCC
TCTGCTTGCTTGGTAAACCCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGCGTCTTGTAATGC
GTCTTCTGACTAGTTGAGCATTCCGCATTCTCAGCCAGTTTAGGATGTTTTAGAGGCTGGATGAAGGTTGACAATGTAAT
ATTATTAGTCTCCTGTTAATTTTTATCTGGTCGGCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis