Browse Element(s) Details


Os.17540.1.S1_at

Description gb:AK099858.1
DB_XREF= gi:32985067
TID=Os.17540.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chorismate mutaseprephenate dehydratase (OSJNBa0096G08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110M24, full insert sequence.
FL= gb:AK099858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3798011/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17540.1.S1_at--808--2951Chr10:20015955..20015979 (25 bp)
AATGAGGCGGCCATCGATCGAACAC
LOC_Os10g37980
Os.17540.1.S1_at--989--511Chr10:20015943..20015967 (25 bp)
ATCGATCGAACACACAGCTGCGGAT
LOC_Os10g37980
Os.17540.1.S1_at--455--2151Chr10:20015930..20015954 (25 bp)
ACAGCTGCGGATCCACATCAAATCA
LOC_Os10g37980
Os.17540.1.S1_at--421--6611Chr10:20015874..20015898 (25 bp)
GTTGGATTAGAGCTCTCCATTCCAG
LOC_Os10g37980
Os.17540.1.S1_at--1079--1291Chr10:20015829..20015853 (25 bp)
AGATGCTATACTTTGCTTGCTTGCT
LOC_Os10g37980
Os.17540.1.S1_at--599--9111Chr10:20015790..20015814 (25 bp)
TGCTGCCTGCTATGCGATTTTTGTA
LOC_Os10g37980
Os.17540.1.S1_at--495--2271Chr10:20015752..20015776 (25 bp)
AAATCTTTACCATTTCTGCTGCTGG
LOC_Os10g37980
Os.17540.1.S1_at--1067--10591Chr10:20015739..20015763 (25 bp)
TTCTGCTGCTGGCTTAGGTATGTGC
LOC_Os10g37980
Os.17540.1.S1_at--551--3031Chr10:20015704..20015728 (25 bp)
AATCCTGGTATTGATGCCTTCTAGC
LOC_Os10g37980
Os.17540.1.S1_at--479--1111Chr10:20015617..20015641 (25 bp)
AGTGAGTATTCCTTAATCCCCATTT
LOC_Os10g37980
Os.17540.1.S1_at--16--3331Chr10:20015559..20015583 (25 bp)
CACTATGCAGTGTTCTGTTGATCTA
LOC_Os10g37980
Target Sequence 
AATGAGGCGGCCATCGATCGAACACACAGCTGCGGATCCACATCAAATCAGCTAGTCTTGCAAGATTTGGATCACTGATC
AGTTGGATTAGAGCTCTCCATTCCAGCACTCACTTCAGTGAGCTACAGATGCTATACTTTGCTTGCTTGCTGCTGATGCT
GCTGCTGCTGCCTGCTATGCGATTTTTGTACAGATGCAATAAGAAATCTTTACCATTTCTGCTGCTGGCTTAGGTATGTG
CATAGGTTTTTAATCCTGGTATTGATGCCTTCTAGCTGAAGGAAAGTGTAAGATGGCACAGGATTGATGTAATTTTGGTG
TGCTAGATCTTGATTGATAGTGAGTATTCCTTAATCCCCATTTGGTCCTNGATCTTCCTCTGTATTCATNNCACCACACT
ATGCAGTGTTCTGTTGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis