Browse Element(s) Details


Os.17550.2.S1_x_at

Description gb:CR285137
DB_XREF= gi:44671703
DB_XREF=CR285137
CLONE=p255d02p3
TID=Os.17550.2
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative translation initiation factor 2B beta subunit (OSJNBa0068A07.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2532011/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25290Os.12012.1.S1_at11/1110+12738382..12739510ZIM motif family protein, expressed
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17550.2.S1_x_at--605--1891Chr10:12760558..12760582 (25 bp)
ACGTTTGACTATGTGCCACCAAAGC
LOC_Os10g25320
Os.17550.2.S1_x_at--818--7271Chr10:12760546..12760570 (25 bp)
GTGCCACCAAAGCTTGTGAGCCTTT
LOC_Os10g25320
Os.17550.2.S1_x_at--768--4931Chr10:12760535..12760559 (25 bp)
GCTTGTGAGCCTTTTCATCACTGAT
LOC_Os10g25320
Os.17550.2.S1_x_at--206--10551Chr10:12760155..12760546 (25 bp)
TTCATCACTGATACGGGAGGGCACA
LOC_Os10g25320
Os.17550.2.S1_x_at--989--3971Chr10:12760142..12760165 (24 bp)
CGGGAGGGCACAGTCCATCATACAT
LOC_Os10g25320
Os.17550.2.S1_x_at--1080--4691Chr10:12760072..12760096 (25 bp)
GCGGCGGAAGTCGACATCTTCATAG
LOC_Os10g25320
Os.17550.2.S1_x_at--423--2951Chr10:12760040..12760064 (25 bp)
AAGGCGCACTAGAGTACTTTAGTAT
LOC_Os10g25320
Os.17550.2.S1_x_at--1130--3991Chr10:12759854..12759878 (25 bp)
CGTGACGGATGCCTGATTGGAACAT
LOC_Os10g25320
Os.17550.2.S1_x_at--626--10391Chr10:12759770..12759794 (25 bp)
TTTTCGAGTCCGTGCATCCTGTGAT
LOC_Os10g25320
Os.17550.2.S1_x_at--1152--7391Chr10:12759750..12759774 (25 bp)
GTGATCTGCCGAGTCCAAATTTTGT
LOC_Os10g25320
Os.17550.2.S1_x_at--44--2251Chr10:12759734..12759758 (25 bp)
AAATTTTGTCTGTTCTTGAGTCCCA
LOC_Os10g25320
Target Sequence 
ACGTTTGACTATGTGCCACCAAAGCTTGTGAGCCTTTTCATCACTGATACGGGAGGGCACAGTCCATCATACATGTNACC
GCCTTATCGCTGAGTATTACTCAGCTGATGATTTGGTAGTGCGGCGGAAGTCGACATCTTCATAGNACNNNAAAGGCGCA
CTAGAGTACTTTAGTATGTTNGGCATTNTGAAGGTACAATNTAGGATGTACACAAATGNCTGTTAGAGAGGTTGCTGTCC
TCAATGGAATCAGCTGTTTTGATCTGGAAGTTGAATTCTGTAATTATTACCNCCGANCCGCAACCAAGCANTTTTGAGTG
TNNAGACTGTTTGAGGCTATGGGCGTGACGGATGCCTGATTGGAACATGAATTGTATAAACTAGAGAAGGAAGCTACATA
TGTGATGCAGGGTGTAAAGTGTGGATGTTTTCGAGTCCGTGCATCCTGTGATCTGCCGAGTCCAAATTTTGTCTGTTCTT
GAGTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17550.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis