Browse Element(s) Details


Os.17699.1.S1_at

Description gb:AK105394.1
DB_XREF= gi:32990603
TID=Os.17699.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406H10.15 (P0406H10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B05, full insert sequence.
FL= gb:AK105394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0843011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17699.1.S1_at--835--5611Chr01:4146634..4146658 (25 bp)
GACAACGCTTTTTCCGGCTTGAGCC
LOC_Os01g08430
Os.17699.1.S1_at--225--4931Chr01:4146650..4146674 (25 bp)
GCTTGAGCCGATGCAAGACTACCCA
LOC_Os01g08430
Os.17699.1.S1_at--96--1411Chr01:4146665..4146689 (25 bp)
AGACTACCCATCTTTTTTGTTGATA
LOC_Os01g08430
Os.17699.1.S1_at--95--4791Chr01:4146705..4146729 (25 bp)
GCTCCATCCGACCAAGTCAGTAGAT
LOC_Os01g08430
Os.17699.1.S1_at--34--7031Chr01:4146773..4146797 (25 bp)
GTACATATGTTGATTTCTCCTTTTC
LOC_Os01g08430
Os.17699.1.S1_at--630--1271Chr01:4146817..4146841 (25 bp)
AGACCTCTGGGTTAACGTATTGTTG
LOC_Os01g08430
Os.17699.1.S1_at--305--811Chr01:4146960..4146984 (25 bp)
ATGGTGACAGTTTCTCTGCTGCAAA
LOC_Os01g08430
Os.17699.1.S1_at--815--2971Chr01:4147055..4147079 (25 bp)
AATGTGTCACCCATAGTCGTGTGTG
LOC_Os01g08430
Os.17699.1.S1_at--319--9431Chr01:4147071..4147095 (25 bp)
TCGTGTGTGTAGCTGTGTTGTTTTA
LOC_Os01g08430
Os.17699.1.S1_at--491--9031Chr01:4147144..4147168 (25 bp)
TGCAGATGTTGGCACGCACACTACA
LOC_Os01g08430
Os.17699.1.S1_at--400--3311Chr01:4147176..4147200 (25 bp)
CACACATGCATTAGCCTTGGTAAAA
LOC_Os01g08430
Target Sequence 
GACAACGCTTTTTCCGGCTTGAGCCGATGCAAGACTACCCATCTTTTTTGTTGATAGAAAGGAGCTCATCTGCTCCATCC
GACCAAGTCAGTAGATAGCATCTTGCCCCCCTTTTTTCTCTCTTTTTTCTTCATCATTTGTACATATGTTGATTTCTCCT
TTTCTTTTTCCCCCCTCTTATTTAGACCTCTGGGTTAACGTATTGTTGGGGGAAATGGGNCNAAATGATAGNCAGCTGTT
GGTNGCAGCCCGGCATTTTCTGCATAACGATGATATANTCCATGTCTTCTCATTGTTGTGACGTTTGAGAGCTGGTCCTG
GGAGAAAGATGGTGACAGTTTCTCTGCTGCAAAAAAAAAANNNNGAGAGAGAGAGAGANANNNNNNNAAAAGTGGTACAT
AATGAGCCTGACANTTGGNTCCCAATGTGTCACCCATAGTCGTGTGTGTAGCTGTGTTGTTTTAATGTTTCAACTGTACA
TAGAGATTGTGCTACAGGTAAAAATAGTGTGATGCAGATGTTGGCACGCACACTACATACACACCACACATGCATTAGCC
TTGGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis